TkA01G112040 | RubberDandelionOmics

Gene overview

TkA01G112040

Reference: TK1151 Chr: Chr01 Coordinates: 28482263-28483300 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1038 bp · TkA01G112040|TK1151|cDNA

ATGTCCATCGCTACCAGTACCGCATCACCACCGCACGCCGCCGGGATTTCTTCTTTACATACGGACATACTAGAATCCCACGTCCTGACTCGACTTGATGGACCAACGTTAGCCTCCGCCAGCTGCGCCTCCGCCACCATACACTCCATGACTGAACAAAACCATCGTCTATGGTCCGATGTATGCCACTCCACTTGGCCTTCGACTTCAGGCGAGCTCATAACCGGAATTATTTCCACTTTCTCCGACGAATCCAACGG...

CDS

Download CDS FASTA

1038 bp · TkA01G112040|TK1151|CDS

ATGTCCATCGCTACCAGTACCGCATCACCACCGCACGCCGCCGGGATTTCTTCTTTACATACGGACATACTAGAATCCCACGTCCTGACTCGACTTGATGGACCAACGTTAGCCTCCGCCAGCTGCGCCTCCGCCACCATACACTCCATGACTGAACAAAACCATCGTCTATGGTCCGATGTATGCCACTCCACTTGGCCTTCGACTTCAGGCGAGCTCATAACCGGAATTATTTCCACTTTCTCCGACGAATCCAACGG...

Protein

Download Protein FASTA

345 aa · TkA01G112040|TK1151|PROTEIN

MSIATSTASPPHAAGISSLHTDILESHVLTRLDGPTLASASCASATIHSMTEQNHRLWSDVCHSTWPSTSGELITGIISTFSDESNGPREFFSQSFPLPSPDPTTATPSSSSMSSPPCGLISAVDVHYRNELIFTKIEETETLTSWFQCSPFRIDLLDPKDMIPTAIPHPEGDDSCTHLIEHMTLSWILIDPVSKLSVNLSSHKPVSVQRHWLSGEVQVRFASILAGGNHKHSSEATALVQWGIVVNCGGSEGGEMQVRE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G112040`
TK1151 ID	TkA01G112040
OH-1004 ID	LXL04_032857
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	64.100
Protein coverage (%)	TK1151 91.884 / OH-1004 91.379 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G112040

Location Chr01:28482263-28483300 (-)

Description Similar to At2g36090: Probable F-box protein At2g36090

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g36090`	Probable F-box protein At2g36090.	No verified direct reference in this release
`At2g27310`	F-box protein At2g27310.	No verified direct reference in this release
`At3g44326`	F-box protein At3g44326.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_032857 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009620 response to fungus Biological Process

GO:0016567 protein ubiquitination Biological Process

GO:0019218 regulation of steroid metabolic process Biological Process

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0019005 SCF ubiquitin ligase complex Cellular Component

KEGG gene cross-reference

ath:AT2G27310

ath:AT2G36090

ath:AT3G44326

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.660

Rank 1 · TkA01G112040 · TK1151

Cytoplasm0.227

Rank 2 · TkA01G112040 · TK1151

Cell membrane0.139

Rank 3 · TkA01G112040 · TK1151

Endoplasmic reticulum0.119

Rank 4 · TkA01G112040 · TK1151

Plastid0.064

Rank 5 · TkA01G112040 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12937F-box-like27-63 aa

PF16996Asp4311-343 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G112040	`PF12937`	F-box-like	27	63	0.061	13.8
TkA01G112040	`PF16996`	Asp4	311	343	0.064	14.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SIH5`	Arabidopsis thaliana	sp\|Q9SIH5\|FB322_ARATH Probable F-box protein At2g36090	47.100%	Swiss-Prot	Medium
`Q9XIN8`	Arabidopsis thaliana	sp\|Q9XIN8\|FB119_ARATH F-box protein At2g27310	39.900%	Swiss-Prot	Medium
`Q2V3R1`	Arabidopsis thaliana	sp\|Q2V3R1\|FB346_ARATH F-box protein At3g44326	42.300%	Swiss-Prot	Medium

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