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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G103340
Reference: TK1151 Chr: Chr01 Coordinates: 26237773-26239690 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1014 bp · TkA01G103340|TK1151|cDNA

ATGGAAGCTTCCAAGGCGACGTTTTCCGGCCGCCTGTTTGTATTCCCTTTTAACCGCAGCGGCCTTGTGACCATCGTCCTTCTCATACTCTTCATCCGTTTTCCAATTCAAATTGATAAATTTAATAGAAGTTTGTATCTTGGAGTTATTTATAAAGACCGAGACAATCTTGATAAAGCAGTCGAGTGTTATCAGTTGGCTTTGTCAATTAAGCCCAATTTCTCCCAGTCTTTGAACAACCTTGGAGTAGTGTACACAGT...

CDS

Download CDS FASTA

1014 bp · TkA01G103340|TK1151|CDS

ATGGAAGCTTCCAAGGCGACGTTTTCCGGCCGCCTGTTTGTATTCCCTTTTAACCGCAGCGGCCTTGTGACCATCGTCCTTCTCATACTCTTCATCCGTTTTCCAATTCAAATTGATAAATTTAATAGAAGTTTGTATCTTGGAGTTATTTATAAAGACCGAGACAATCTTGATAAAGCAGTCGAGTGTTATCAGTTGGCTTTGTCAATTAAGCCCAATTTCTCCCAGTCTTTGAACAACCTTGGAGTAGTGTACACAGT...

Protein

Download Protein FASTA

337 aa · TkA01G103340|TK1151|PROTEIN

MEASKATFSGRLFVFPFNRSGLVTIVLLILFIRFPIQIDKFNRSLYLGVIYKDRDNLDKAVECYQLALSIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAIVANPTYAEAYNNLGVLYRDAGSISLAIEAYEQCVKIDPDSCNAGQNRLLAMNYINEGTDEKLYEAHRDWGRRFMRLYPQYTTCENSKDPERPLVIGYVSPDYFTHSVSYFIEAPLIYHDYGKFKVVVYSAGVKIGYPNTTGLPTIDYRITDSLADPID...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G103340
TK1151 IDTkA01G103340
OH-1004 IDLXL04_030311
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)99.100
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G103340
LocationChr01:26237773-26239690 (-)
DescriptionSimilar to SPY: Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g11540 Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway and circadian clock. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os08g0559300 Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_030311 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009740 gibberellic acid mediated signaling pathway Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0046922 peptide-O-fucosyltransferase activity Molecular Function
GO:0097363 protein O-acetylglucosaminyltransferase activity Molecular Function
KEGG gene cross-reference
sly:543775
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.253
Rank 1 · TkA01G103340 · TK1151
Mitochondrion0.175
Rank 2 · TkA01G103340 · TK1151
Nucleus0.168
Rank 3 · TkA01G103340 · TK1151
Endoplasmic reticulum0.137
Rank 4 · TkA01G103340 · TK1151
Plastid0.122
Rank 5 · TkA01G103340 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24575TPR_Slam39-95 aa
PF11846Wzy_C_242-113 aa
PF21033RMD1-344-74 aa
PF13428TPR_1445-81 aa
PF13432TPR_1645-72 aa
PF13174TPR_645-66 aa
PF14559TPR_1945-74 aa
PF29407CFAP70_TPR_C45-139 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G103340PF24575TPR_Slam39950.005417.8
TkA01G103340PF11846Wzy_C_2421130.02515.3
TkA01G103340PF21033RMD1-344740.0002720.9
TkA01G103340PF13428TPR_1445816.7e-0936.3
TkA01G103340PF13432TPR_1645721.2e-0836.0
TkA01G103340PF13174TPR_645661.6e-0629.1
TkA01G103340PF14559TPR_1945742.2e-0525.4
TkA01G103340PF29407CFAP70_TPR_C451392.8e-0524.5
TkA01G103340PF23914TPR_CcmH_CycH451370.003517.9
TkA01G103340PF00515TPR_146743.9e-2587.3
TkA01G103340PF07719TPR_246731.1e-1866.4
TkA01G103340PF13431TPR_1746611.6e-1453.5
TkA01G103340PF13424TPR_12461027.1e-1246.1
TkA01G103340PF25063ARM_TT21_C46713e-0524.7
TkA01G103340PF30484ETO1_C46718.7e-0522.6
TkA01G103340PF13181TPR_847731.2e-1969.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q96301Arabidopsis thalianasp|Q96301|SPY_ARATH Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY50.200%Swiss-ProtLow
Q6YZI0Oryza sativa subsp. japonicasp|Q6YZI0|SPY_ORYSJ Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY50.800%Swiss-ProtLow

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