TkA01G102850 | RubberDandelionOmics

Gene overview

TkA01G102850

Reference: TK1151 Chr: Chr01 Coordinates: 26077727-26086959 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2613 bp · TkA01G102850|TK1151|cDNA

TATTCAGTTTCAAATATTCACTACGTGCTGATTTTAAAATGTCAACATCTGATCTCCCACTTGTGGGTCTGTTTTTTAATCTGTTGTAGATGCAGTTAAAGTTGTTAATTTTACGATGCATATCCTTCCATTTCGAGTGCACCTGGTCTTTTGAACGATCACTGCCTCGAAGTTGGGTACGAAAGTGCTCGAGAATATCCTCCCAGAATGCTGATCTTGATTTCTGGTTTCCTCTTATTTTGTCTGCTGAACAGTCGATA...

CDS

Download CDS FASTA

963 bp · TkA01G102850|TK1151|CDS

ATGGCGACAGTTCGAATGATAGACATTGCCGTTAACTTCACAGATGGCATGTTCAAGGGTGTGTATAATGGAAAACAATGTCACTTACCTGATATTGCAGCAGTTTTAAGTAGGGCTTGGAGTGCTGGCGTTGATCGAATTATTGTCACAGGAGGATCACTTGAGGAGTCGAAGGAAGCTTTAACTATTGCAGAAACTGATGCAAGACTATTCTGTACAGTTGGAGTGCACCCAACAAGATGCAATGAGTTTGATGAGAG...

Protein

Download Protein FASTA

320 aa · TkA01G102850|TK1151|PROTEIN

MATVRMIDIAVNFTDGMFKGVYNGKQCHLPDIAAVLSRAWSAGVDRIIVTGGSLEESKEALTIAETDARLFCTVGVHPTRCNEFDESGDPEKHFQALLSLAKVGVEKGKVVAIGECGLDYDRTHFCSPEIQKKYFERQFEIAHLLKLPMFLHMRAAATDFCDILEQNNHRFHGGVAHSFTGTPEDRDKLLTFNNLFIGINGCSLKTSENLDALKGIPIDRMMIETDSPYCEIKNTHAGKHFIKSTWPSKKKEKYDHDFLV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G102850`
TK1151 ID	TkA01G102850
OH-1004 ID	LXL04_004836
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	86.100
Protein coverage (%)	TK1151 98.438 / OH-1004 65.655 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA01G102850`
Location	Chr01:26077727-26086959 (-)
Description	Similar to tatdn1: Putative deoxyribonuclease TATDN1
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_004836` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006260 DNA replication Biological Process GO:0005634 nucleus Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0005739 mitochondrion Cellular Component GO:0005829 cytosol Cellular Component GO:0004520 DNA endonuclease activity Molecular Function GO:0004530 deoxyribonuclease I activity Molecular Function GO:0008296 3'-5'-DNA exonuclease activity Molecular Function GO:0046872 metal ion binding Molecular Function
KEGG gene cross-reference	bta:509365 dre:100151626 hsa:83940 mmu:69694 xla:494648 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.635

Rank 1 · TkA01G102850 · TK1151

Nucleus0.402

Rank 2 · TkA01G102850 · TK1151

Mitochondrion0.115

Rank 3 · TkA01G102850 · TK1151

Cell membrane0.076

Rank 4 · TkA01G102850 · TK1151

Endoplasmic reticulum0.060

Rank 5 · TkA01G102850 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01026TatD_DNase30-300 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G102850	`PF01026`	TatD_DNase	30	300	1.5e-49	169.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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