TkA01G101110 | RubberDandelionOmics

Gene overview

TkA01G101110

Reference: TK1151 Chr: Chr01 Coordinates: 25577530-25583567 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2176 bp · TkA01G101110|TK1151|cDNA

ACTAAGACCGGCATTCGTTTTTGTATTATAAACATGTTTGTTACAGCGGAAGATATCGAAGCTGGCACGCGTAAAAAGTTTCAAACAGAGCCTACCTTGCAAATCTATCTAAAGTTAAAGACACTGTCAAAAAGTTAAATGAGAAGGCATAAAGATAGGCATAAAATGAAAACATGGAGTTTTTTCTATGAGAACAATACGAGATGAGATGTCAGGTTGAGTCTTGTACAAAAAATCTCATAATTTATGGTATTTATGTA...

CDS

Download CDS FASTA

1821 bp · TkA01G101110|TK1151|CDS

ATGGAGAAACCGGCTTCAAGTACAGGGTTATGGAGAACGAAGTCGGATCAATTACCCAAGATATTGGGAGATGCAATGAAATCGCCAGTGTCAAACGAAGAAACAAAAGAAGTTGACAGTTATACGCTTTCAAGAAAATCTAGCAAGAATCAAGTGCTTGCATCACCGGGCCGAACTGGCACTAGTGGAAGAAACACGCACATCAAAAGAGGAAAGAGTGGTCAAATAAAATTTGATTATGATGATGTTGGGAGTGGGGC...

Protein

Download Protein FASTA

606 aa · TkA01G101110|TK1151|PROTEIN

MEKPASSTGLWRTKSDQLPKILGDAMKSPVSNEETKEVDSYTLSRKSSKNQVLASPGRTGTSGRNTHIKRGKSGQIKFDYDDVGSGAALSRASSASLGFSFSLAAFTMPPDEIVDSRPFSDDDIPEDIEAGTRKKFQTEPTLQIYLKFTDVTYKIITKGVTSTEEKYILNGINGFVNPGEVLALMGPSGSGKTTLLSLLGGRLRDHTSGGSITYNDQPYSKFLKSRIGFVTQDDVLFPHLTVKETITYAALLRLSKTLTK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G101110`
TK1151 ID	TkA01G101110
OH-1004 ID	LXL04_004857
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	98.500
Protein coverage (%)	TK1151 99.835 / OH-1004 77.497 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G101110

Location Chr01:25577530-25583567 (-)

Description Similar to ABCG22: ABC transporter G family member 22

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g06530`	ABC transporter G family member 22.	No verified direct reference in this release
`At3g52310`	ABC transporter G family member 27.	No verified direct reference in this release
`At4g27420`	Together with ABCG31, involved in pollen coat deposition of steryl glycosides required for pollen fitness.	ABCG9, ABCG11 and ABCG14 ABC transporters are required for vascular development in Arabidopsis.2013 · DOI: 10.1111/tpj.12334 The role of Arabidopsis ABCG9 and ABCG31 ATP binding cassette transporters in pollen fitness and the deposition of steryl glycosides on the pollen coat.2014 · DOI: 10.1105/tpc.113.118935
`At3g13220`	Mediates the transport of sporopollenin precursors (e.g. polyketides) across the tapetum plasma membrane into the anther locule for polymerization on developing microspore walls, thus being required for male fertility and pollen exine formation and patterning prior to tapetum programmed cell death.	ATP-binding cassette transporter G26 is required for male fertility and pollen exine formation in Arabidopsis.2010 · DOI: 10.1104/pp.110.161968 WBC27, an adenosine tri-phosphate-binding cassette protein, controls pollen wall formation and patterning in Arabidopsis.2011 · DOI: 10.1111/j.1744-7909.2010.01010.x An ABCG/WBC-type ABC transporter is essential for transport of sporopollenin precursors for exine formation in developing pollen.2011 · DOI: 10.1111/j.1365-313x.2010.04412.x Arabidopsis mutant of AtABCG26, an ABC transporter gene, is defective in pollen maturation.2011 · DOI: 10.1016/j.jplph.2011.05.014 ABCG26-mediated polyketide trafficking and hydroxycinnamoyl spermidines contribute to pollen wall exine formation in Arabidopsis.2014 · DOI: 10.1105/tpc.114.130484
`At1g31770`	Positive regulator of plant growth which acts as an efflux pump involved in the major root-to-shoot (acropetal) long-distance cytokinin (CK) transport via the xylem sap.	ABCG9, ABCG11 and ABCG14 ABC transporters are required for vascular development in Arabidopsis.2013 · DOI: 10.1111/tpj.12334 Arabidopsis ABCG14 protein controls the acropetal translocation of root-synthesized cytokinins.2014 · DOI: 10.1038/ncomms4274 Arabidopsis ABCG14 is essential for the root-to-shoot translocation of cytokinin.2014 · DOI: 10.1073/pnas.1321519111 Cytokinin Response Factor 6 Represses Cytokinin-Associated Genes during Oxidative Stress.2016 · DOI: 10.1104/pp.16.00415 A Role of Cytokinin Transporter in Arabidopsis Immunity.2017 · DOI: 10.1094/mpmi-01-17-0011-r

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_004857 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009414 response to water deprivation Biological Process

GO:0009555 pollen development Biological Process

GO:0009736 cytokinin-activated signaling pathway Biological Process

GO:0010115 regulation of abscisic acid biosynthetic process Biological Process

GO:0010148 transpiration Biological Process

GO:0010152 pollen maturation Biological Process

GO:0010184 cytokinin transport Biological Process

GO:0010208 pollen wall assembly Biological Process

GO:0010222 stem vascular tissue pattern formation Biological Process

GO:0010584 pollen exine formation Biological Process

GO:0010588 cotyledon vascular tissue pattern formation Biological Process

GO:0030638 polyketide metabolic process Biological Process

KEGG gene cross-reference

ath:AT1G31770

ath:AT3G13220

ath:AT4G27420

ath:AT5G06530

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.775

Rank 1 · TkA01G101110 · TK1151

Cytoplasm0.116

Rank 2 · TkA01G101110 · TK1151

Endoplasmic reticulum0.099

Rank 3 · TkA01G101110 · TK1151

Lysosome / Vacuole0.056

Rank 4 · TkA01G101110 · TK1151

Golgi apparatus0.049

Rank 5 · TkA01G101110 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03205MobB35-59 aa

PF03193RsgA_GTPase161-207 aa

PF00005ABC_tran169-320 aa

PF13481AAA_25172-199 aa

PF02367TsaE173-213 aa

PF13191AAA_16180-224 aa

PF13555AAA_29180-196 aa

PF25199nSTAND_NTPase5180-218 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G101110	`PF03205`	MobB	35	59	0.29	11.8
TkA01G101110	`PF03193`	RsgA_GTPase	161	207	0.021	15.3
TkA01G101110	`PF00005`	ABC_tran	169	320	2.8e-31	109.7
TkA01G101110	`PF13481`	AAA_25	172	199	0.0066	16.8
TkA01G101110	`PF02367`	TsaE	173	213	0.15	12.7
TkA01G101110	`PF13191`	AAA_16	180	224	0.0053	18.0
TkA01G101110	`PF13555`	AAA_29	180	196	0.052	14.1
TkA01G101110	`PF25199`	nSTAND_NTPase5	180	218	0.19	12.3
TkA01G101110	`PF13401`	AAA_22	181	236	0.004	18.2
TkA01G101110	`PF02463`	SMC_N	181	356	0.058	13.5
TkA01G101110	`PF03205`	MobB	181	199	0.29	11.8
TkA01G101110	`PF13304`	AAA_21	182	201	2.2e-06	28.6
TkA01G101110	`PF03266`	NTPase_1	183	214	0.067	13.7
TkA01G101110	`PF13238`	AAA_18	183	203	0.21	12.8
TkA01G101110	`PF13304`	AAA_21	310	351	2.2e-06	28.6
TkA01G101110	`PF03266`	NTPase_1	329	360	0.067	13.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q93YS4`	Arabidopsis thaliana	sp\|Q93YS4\|AB22G_ARATH ABC transporter G family member 22	69.000%	Swiss-Prot	High
`Q9FT51`	Arabidopsis thaliana	sp\|Q9FT51\|AB27G_ARATH ABC transporter G family member 27	61.800%	Swiss-Prot	High
`Q9SZR9`	Arabidopsis thaliana	sp\|Q9SZR9\|AB9G_ARATH ABC transporter G family member 9	50.000%	Swiss-Prot	High
`Q9LK50`	Arabidopsis thaliana	sp\|Q9LK50\|AB26G_ARATH ABC transporter G family member 26	47.500%	Swiss-Prot	Medium
`Q9C6W5`	Arabidopsis thaliana	sp\|Q9C6W5\|AB14G_ARATH ABC transporter G family member 14	50.200%	Swiss-Prot	High

JBrowse

View in Genome Browser

Gene Card