TkA01G098770 | RubberDandelionOmics

Gene overview

TkA01G098770

Reference: TK1151 Chr: Chr01 Coordinates: 24967734-24969637 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1587 bp · TkA01G098770|TK1151|cDNA

TCTTTCTTACTCGTATTTCATAAAATTGCAAACAGAGAAACCCTAGAGAACAAAATATGTCTTGGTATGATCCGACACCCATTTTCTTTTGAATTGAGCGACACCTCCATCGACTCCATAGCTTCGCTGCTTCCTCTGTTCCTCGTTCTTCCACAGCTTCCGTTCCTAGATTCAGTCCAACTTTCCCTGAAGTGAAAAAAACAATGCAAAATCCTAGCCAACACGCGACTCACATTCCTTAGTTTTGAATTGTACCAGAA...

CDS

Download CDS FASTA

1053 bp · TkA01G098770|TK1151|CDS

ATGGCATTTTCTTCGTATTGCCGTCAAGCTGTTAATGGATCCTTTTCTTTGATTACTTCGAGGATTAGCACCACCTCTCAGATGAGATCCAAGCACACTATCACCCGTGCTCAAAATGTCAGCTCAGAAAGGCCACTCAGGCAATTCCTTACAGGAAAAGACACGTCAGCAGGAAGAAACTCAAAAGGTCGCATCACAATTTTCCACAGAGGTGGAGGGGCAAAACGGTCACAAAGAACAATCGACCTAAAACGCAACAC...

Protein

Download Protein FASTA

350 aa · TkA01G098770|TK1151|PROTEIN

MAFSSYCRQAVNGSFSLITSRISTTSQMRSKHTITRAQNVSSERPLRQFLTGKDTSAGRNSKGRITIFHRGGGAKRSQRTIDLKRNTSSVGVVERIEYDPNRTSRIAVVRWVDVSPVDQPKKVNPTFTFTPPPKSLPSISIKGQFSFSSIPGIIQDTKVEPSRSKSDHVVVGLPKGQLTSQSQSQTGGQFTNVKDVFLSAFSYSNVKRHHSPYSFVNSLGVPRIAVAGAKPEFFVPRIKDDLRESESLMSNEVKRWDKES...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G098770`
TK1151 ID	TkA01G098770
OH-1004 ID	LXL04_004894
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.900
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G098770

Location Chr01:24967734-24969637 (-)

Description Similar to RPL2: 60S ribosomal protein L2, mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`AtMg00560`	Large ribosomal subunit protein uL2mz, N-terminal part.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: P0C8K6`	Large ribosomal subunit protein uL2m.	No verified direct reference in this release
`UniProt: Q2F969`	Large ribosomal subunit protein uL2m.	No verified direct reference in this release
`UniProt: P92812`	Large ribosomal subunit protein uL2m.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_004894 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006412 translation Biological Process

GO:0032543 mitochondrial translation Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005762 mitochondrial large ribosomal subunit Cellular Component

GO:0015934 large ribosomal subunit Cellular Component

GO:0003723 RNA binding Molecular Function

GO:0003729 mRNA binding Molecular Function

GO:0003735 structural constituent of ribosome Molecular Function

GO:0016740 transferase activity Molecular Function

KEGG gene cross-reference

dosa:rpl2

osa:6450181

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.783

Rank 1 · TkA01G098770 · TK1151

Nucleus0.067

Rank 2 · TkA01G098770 · TK1151

Cytoplasm0.055

Rank 3 · TkA01G098770 · TK1151

Plastid0.038

Rank 4 · TkA01G098770 · TK1151

Cell membrane0.005

Rank 5 · TkA01G098770 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00181Ribosomal_L2_N48-112 aa

PF00181Ribosomal_L2_N318-334 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G098770	`PF00181`	Ribosomal_L2_N	48	112	2.8e-21	76.1
TkA01G098770	`PF00181`	Ribosomal_L2_N	318	334	2.8e-21	76.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`P93311`	Arabidopsis thaliana	sp\|P93311\|RM02N_ARATH Large ribosomal subunit protein uL2mz, N-terminal part	45.600%	Swiss-Prot	Medium
`P0C8K6`	Oryza sativa	sp\|P0C8K6\|RM02_ORYSA Large ribosomal subunit protein uL2m	36.800%	Swiss-Prot	Medium
`Q2F969`	Oryza sativa subsp. indica	sp\|Q2F969\|RM02_ORYSI Large ribosomal subunit protein uL2m	36.800%	Swiss-Prot	Medium
`P92812`	Oryza sativa subsp. japonica	sp\|P92812\|RM02_ORYSJ Large ribosomal subunit protein uL2m	36.800%	Swiss-Prot	Medium

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