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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G093570
Reference: TK1151 Chr: Chr01 Coordinates: 23668844-23670547 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1620 bp · TkA01G093570|TK1151|cDNA

ATGGATGTTGAGTTTAAAGATATCAATGGGAACCACGTGGGTTTGGATCTTGACTCGATGGTTTCGACTCAGGTTGCCGATTTGGACTCGGTTAACATCAATTTACGAAGTGGCACCATTGTCAATTCCTGGATCGATTATTCAAGTTCAATACAGCAACTCAACATCTCGATTTCGTATTCCAGCACAAAACCCAAATCACCGGTTCTATCAATCACCACCAATCTCAATCGATTCATGAACGAGTTTATGTTTGTCGG...

CDS

Download CDS FASTA

1620 bp · TkA01G093570|TK1151|CDS

ATGGATGTTGAGTTTAAAGATATCAATGGGAACCACGTGGGTTTGGATCTTGACTCGATGGTTTCGACTCAGGTTGCCGATTTGGACTCGGTTAACATCAATTTACGAAGTGGCACCATTGTCAATTCCTGGATCGATTATTCAAGTTCAATACAGCAACTCAACATCTCGATTTCGTATTCCAGCACAAAACCCAAATCACCGGTTCTATCAATCACCACCAATCTCAATCGATTCATGAACGAGTTTATGTTTGTCGG...

Protein

Download Protein FASTA

539 aa · TkA01G093570|TK1151|PROTEIN

MDVEFKDINGNHVGLDLDSMVSTQVADLDSVNINLRSGTIVNSWIDYSSSIQQLNISISYSSTKPKSPVLSITTNLNRFMNEFMFVGFSGSTQGSTEVHSVEWWSFSSSAVTSPPPSMPPSNSNTSTAHTSQKQSKCHNHLCKQGAGAVAGVVTASAFFLALCAILLIWVYSKKFKQTKKPELFASDIFKSPKEFSYKELKLATRCFDPTRVIGHGAFGTVYRGILSETGDVVAVKRCSHSGDQGKAEFLSELSIIGTLR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G093570
TK1151 IDTkA01G093570
OH-1004 IDLXL04_004959
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)94.700
Protein coverage (%)TK1151 100.000 / OH-1004 61.297
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G093570
LocationChr01:23668844-23670547 (+)
DescriptionSimilar to LECRK81: L-type lectin-domain containing receptor kinase VIII.1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g53380 L-type lectin-domain containing receptor kinase VIII.1. No verified direct reference in this release
At5g03140 Involved in resistance response to the pathogenic oomycetes Phytophthora infestans and Phytophthora capsici. No verified direct reference in this release
At5g55830 Involved in resistance response to the pathogenic oomycetes Phytophthora infestans and Phytophthora capsici. No verified direct reference in this release
At3g55550 Involved in resistance response to the pathogenic oomycetes Phytophthora infestans and Phytophthora capsici and to the pathogenic bacteria Pseudomonas syringae. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os04g0531400 Lectin-domain containing receptor kinase involved in salt stress response. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_004959 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0002229 defense response to oomycetes Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0004674 protein serine/threonine kinase activity Molecular Function
GO:0004675 transmembrane receptor protein serine/threonine kinase activity Molecular Function
GO:0005524 ATP binding Molecular Function
GO:0030246 carbohydrate binding Molecular Function
GO:0106310 protein serine kinase activity Molecular Function
KEGG gene cross-reference
ath:AT3G53380
ath:AT3G55550
ath:AT5G03140
ath:AT5G42120
ath:AT5G55830
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.843
Rank 1 · TkA01G093570 · TK1151
Cytoplasm0.102
Rank 2 · TkA01G093570 · TK1151
Endoplasmic reticulum0.073
Rank 3 · TkA01G093570 · TK1151
Nucleus0.071
Rank 4 · TkA01G093570 · TK1151
Golgi apparatus0.025
Rank 5 · TkA01G093570 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00139Lectin_legB3-113 aa
PF00069Pkinase210-410 aa
PF07714PK_Tyr_Ser-Thr211-419 aa
PF03109ABC1213-237 aa
PF06293Kdo278-345 aa
PF01636APH289-340 aa
PF14531Kinase-like297-412 aa
PF17667Pkinase_fungal306-393 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G093570PF00139Lectin_legB31131.1e-28101.1
TkA01G093570PF00069Pkinase2104108.7e-49167.0
TkA01G093570PF07714PK_Tyr_Ser-Thr2114194.7e-46157.9
TkA01G093570PF03109ABC12132370.0003820.4
TkA01G093570PF06293Kdo2783450.07613.2
TkA01G093570PF01636APH2893400.1412.7
TkA01G093570PF14531Kinase-like2974120.00516.9
TkA01G093570PF17667Pkinase_fungal3063938.5e-0522.2
TkA01G093570PF07387Seadorna_VP73063490.02314.4
TkA01G093570PF03109ABC13163600.0003820.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LFH9Arabidopsis thalianasp|Q9LFH9|LRK81_ARATH L-type lectin-domain containing receptor kinase VIII.163.900%Swiss-ProtHigh
Q9LYX1Arabidopsis thalianasp|Q9LYX1|LRK82_ARATH L-type lectin-domain containing receptor kinase VIII.264.100%Swiss-ProtHigh
Q9FHG4Arabidopsis thalianasp|Q9FHG4|LRKS7_ARATH Probable L-type lectin-domain containing receptor kinase S.747.900%Swiss-ProtMedium
Q9M2S4Arabidopsis thalianasp|Q9M2S4|LRKS4_ARATH L-type lectin-domain containing receptor kinase S.439.500%Swiss-ProtMedium
Q7XUN6Oryza sativa subsp. japonicasp|Q7XUN6|SIT2_ORYSJ L-type lectin-domain containing receptor kinase SIT237.700%Swiss-ProtMedium

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