Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1080 bp · TkA01G092270|TK1151|cDNA
ATGACGACGCTTCGAGGAAAAGATTATCATTGGAAGGAAGTCAAACGTCGGAATCGAAAATCGGTGTTTGATCGGCTAAGTCCAAAATTCAAGTCTAACCAGGAGCAATTGGAGAATGTGACTACGTCCATTTACGTCGCAAATTTCCCGTCCCATCTGACGGTGAAAGAATTGTGGAGGATCTGTGGAGCCTATGGGGTGGTAGTTGATGTCTTCATTGGGCGATCAAAGAATAAGCAAGGCCGGATGTTTGCCTTTGT...
1080 bp · TkA01G092270|TK1151|CDS
ATGACGACGCTTCGAGGAAAAGATTATCATTGGAAGGAAGTCAAACGTCGGAATCGAAAATCGGTGTTTGATCGGCTAAGTCCAAAATTCAAGTCTAACCAGGAGCAATTGGAGAATGTGACTACGTCCATTTACGTCGCAAATTTCCCGTCCCATCTGACGGTGAAAGAATTGTGGAGGATCTGTGGAGCCTATGGGGTGGTAGTTGATGTCTTCATTGGGCGATCAAAGAATAAGCAAGGCCGGATGTTTGCCTTTGT...
Protein
Download Protein FASTA359 aa · TkA01G092270|TK1151|PROTEIN
MTTLRGKDYHWKEVKRRNRKSVFDRLSPKFKSNQEQLENVTTSIYVANFPSHLTVKELWRICGAYGVVVDVFIGRSKNKQGRMFAFVRFIKVSNVITLVQDLSNIRIGTMRLHANVPKHHGGRLLLVRHGSLLLVRHVEKEENRKKKVQSSISIDSHSSIENAYPFAVIGCYKDFRAIANVSFKERIVWLEMEGIPLLRGVGDETFKSIAGKWGELLFVDNTDETNRCNIRIGVKTIQTTLIFESTYLSLRGVEYCIRVR...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA01G092270 |
|---|---|
| TK1151 ID | TkA01G092270 |
| OH-1004 ID | LXL04_004975 |
| Relationship / confidence | Multi Source To Oh1004 / Complex relationship |
| Protein identity (%) | 78.500 |
| Protein coverage (%) | TK1151 97.772 / OH-1004 78.824Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA01G092270 |
|---|---|
| Location | Chr01:23322419-23323747 (-) |
| Description | Protein of unknown function |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | No functional description available |
| KEGG gene cross-reference | No functional description available |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF28978RRM_SRRT41-116 aaPF00076RRM_144-112 aaPF07887Calmodulin_bind100-117 aaPF07887Calmodulin_bind181-238 aaPF07887Calmodulin_bind293-307 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA01G092270 | PF28978 | RRM_SRRT | 41 | 116 | 0.00065 | 20.5 |
| TkA01G092270 | PF00076 | RRM_1 | 44 | 112 | 7.2e-08 | 32.9 |
| TkA01G092270 | PF07887 | Calmodulin_bind | 100 | 117 | 0.15 | 12.9 |
| TkA01G092270 | PF07887 | Calmodulin_bind | 181 | 238 | 0.15 | 12.9 |
| TkA01G092270 | PF07887 | Calmodulin_bind | 293 | 307 | 0.15 | 12.9 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.