RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G091630
Reference: TK1151 Chr: Chr01 Coordinates: 23195726-23200027 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2127 bp · TkA01G091630|TK1151|cDNA

TGTCACGTCCTCCATTTCAAATTGAGCTTCACCCATTTCAAAATCCATCCAAAGATCAAAACTAGTCCAGGATTTAACCCTAATTTCCAGGAAAGGCAGGGCTTTTAAGCACACGCATGTCGTATTTACGCAGACAAAATACACATTGCACATTCCTCCTTTTGTCTCTTCTCTCTTGACTCCTTTTATGTCCAACAGCTGTAGATAGCTTCTTGGGCGAGCGCGCCCAAAACTCATATTGGGATTCCTTTTCAAAAACT...

CDS

Download CDS FASTA

1305 bp · TkA01G091630|TK1151|CDS

ATGGCCGGTGAAATCGCAGCGTCTCATAGGAGAGACCCCATCAAGAATACAGTTGGGAATGCTGCTGTACAACGGAGAAGACATCATGCTGTTTCAGTGGCGAAAGAAAGAAGAGAAGCGATGTTCAGAACCAAGCGATTGTGTACGGAAGGATTTAGCAACGACATGGATGTTCATGTCGCCATCAATGGCGACATGATGATTGAAGAGGAGCCATCAGTTCTAGAAGCTCAAACGTCTTCTGCTGTCGAAGAACTCAA...

Protein

Download Protein FASTA

434 aa · TkA01G091630|TK1151|PROTEIN

MAGEIAASHRRDPIKNTVGNAAVQRRRHHAVSVAKERREAMFRTKRLCTEGFSNDMDVHVAINGDMMIEEEPSVLEAQTSSAVEELKLAIASKGIDTVQKKVNALRELRRLLSRSDFPFVEIALKSGAIPLLSQCLSFGSQDEQLLEAAWCLTNIAAGKPEETKSLVPTLPLLIAHLGDKSSLSVGEQCAWALGNVGGESEELRDLLLSQGALIPLARMMLQDKGTTVITASWALSNLIKGPHSEAATELIKIDGVVDAI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA01G091630
TK1151 IDTkA01G091630
OH-1004 IDLXL04_004952
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)98.200
Protein coverage (%)TK1151 91.935 / OH-1004 75.335
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G091630
LocationChr01:23195726-23200027 (-)
DescriptionSimilar to IMPA9: Importin subunit alpha-9
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g03070 Binds to conventional NLS motifs and mediates nuclear protein import across the nuclear envelope (By similarity). No verified direct reference in this release
At4g16143 Binds to conventional NLS motifs and mediates nuclear protein import across the nuclear envelope.
SWO1 modulates cell wall integrity under salt stress by interacting with importin ɑ in Arabidopsis.2021 · DOI: 10.1007/s44154-021-00010-5

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0158000 Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_004952 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006606 protein import into nucleus Biological Process
GO:0006607 NLS-bearing protein import into nucleus Biological Process
GO:0006612 protein targeting to membrane Biological Process
GO:0009651 response to salt stress Biological Process
GO:0031144 proteasome localization Biological Process
GO:0051170 import into nucleus Biological Process
GO:0071555 cell wall organization Biological Process
GO:2000280 regulation of root development Biological Process
GO:0005634 nucleus Cellular Component
GO:0005635 nuclear envelope Cellular Component
GO:0005730 nucleolus Cellular Component
GO:0005737 cytoplasm Cellular Component
KEGG gene cross-reference
ath:AT4G16143
ath:AT5G03070
dosa:Os01g0158000
sce:YNL189W
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.520
Rank 1 · TkA01G091630 · TK1151
Nucleus0.476
Rank 2 · TkA01G091630 · TK1151
Mitochondrion0.064
Rank 3 · TkA01G091630 · TK1151
Cell membrane0.059
Rank 4 · TkA01G091630 · TK1151
Endoplasmic reticulum0.048
Rank 5 · TkA01G091630 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00514Arm98-116 aa
PF30746TMCO699-399 aa
PF13646HEAT_2103-120 aa
PF00514Arm123-157 aa
PF13646HEAT_2127-166 aa
PF03130HEAT_PBS128-136 aa
PF03224V-ATPase_H_N132-143 aa
PF13646HEAT_2141-207 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G091630PF00514Arm981162.7e-2485.0
TkA01G091630PF30746TMCO6993992e-1763.8
TkA01G091630PF13646HEAT_21031202.2e-0525.4
TkA01G091630PF00514Arm1231572.7e-2485.0
TkA01G091630PF13646HEAT_21271662.2e-0525.4
TkA01G091630PF03130HEAT_PBS1281360.06814.5
TkA01G091630PF03224V-ATPase_H_N1321430.09312.9
TkA01G091630PF13646HEAT_21412072.2e-0525.4
TkA01G091630PF13513HEAT_EZ1461961.2e-0732.8
TkA01G091630PF03130HEAT_PBS1471770.06814.5
TkA01G091630PF00514Arm1701952.7e-2485.0
TkA01G091630PF03130HEAT_PBS1881980.06814.5
TkA01G091630PF00514Arm2012382.7e-2485.0
TkA01G091630PF03224V-ATPase_H_N2233060.09312.9
TkA01G091630PF13513HEAT_EZ2262381.2e-0732.8
TkA01G091630PF08324PUL2312660.05513.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4KF65Arabidopsis thalianasp|F4KF65|IMPA9_ARATH Importin subunit alpha-964.000%Swiss-ProtHigh
F4JL11Arabidopsis thalianasp|F4JL11|IMPA2_ARATH Importin subunit alpha-229.800%Swiss-ProtLow
Q9FYP9Oryza sativa subsp. japonicasp|Q9FYP9|IMAP2_ORYSJ Importin subunit alpha-251.100%Swiss-ProtHigh

JBrowse

View in Genome Browser