TkA01G090390 | RubberDandelionOmics

Gene overview

TkA01G090390

Reference: TK1151 Chr: Chr01 Coordinates: 22965718-22969348 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2350 bp · TkA01G090390|TK1151|cDNA

GGAATCAAGAGTGGAACTTTGTTTAAAGCAATTGACAATGATGATCATCACCACCTCTCTATATATCTAAACAAATACATACAATTTCCTACAAGTATATATACGCATTTAAACGTTTACATTGATACATTCCACAGTTTCCACTTTTTTTCTTTCCCAATCCCTCCACGATAATGCTTGTAAAAAGCTACCATTTTTCTTTTTGATTCTAGCATTTGCGTACATACCCACATACATCTCTCCATATTTTCGATAAATTT...

CDS

Download CDS FASTA

1473 bp · TkA01G090390|TK1151|CDS

ATGAAGTTCTTTATCGTTTTGTTGGTAGCGGCGGCAGCCGCCTCAGCAGTGAACGGCTTTGTCGGTGGGTTTCCGGCCAGGGTTCTGACTTTGGAAAGGGTTTTTCCGGCGAACAAGACGGTCGAGCTTGAAGTCCTCAAAACACGAGACCGTGTCAGACACGCCCGAGTCTTGCAACGTTTCTCCGGCGGCATTGTCGACTTCAACGTCGTCGGCACCTCCGATCCTTACTACGGCGGGCTGTATTTTACGAAAGTGAA...

Protein

Download Protein FASTA

490 aa · TkA01G090390|TK1151|PROTEIN

MKFFIVLLVAAAAASAVNGFVGGFPARVLTLERVFPANKTVELEVLKTRDRVRHARVLQRFSGGIVDFNVVGTSDPYYGGLYFTKVKLGSPPQEFNVQIDTGSDVLWVTCSSCTDCPQSSGFGVPLNFFDAGSSSTASTVSCSDSICSSIVQTSDASCSKNDNQCSYRFQYGDGSGTSGHYVTDLLFFDTIVGPSMVANSSASITFGCSTYQSGSLTKPEKAIDGIFGFGQHGLSVVSQLSSRGITPKVFSHCLKGDGLG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G090390`
TK1151 ID	TkA01G090390
OH-1004 ID	LXL04_005071
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.600
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G090390

Location Chr01:22965718-22969348 (-)

Description Similar to At1g65240: Aspartic proteinase-like protein 2

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g36260`	Displays aspartic proteolytic activity.	No verified direct reference in this release
`At1g65240`	Displays aspartic proteolytic activity.	No verified direct reference in this release
`At5g33340`	Involved in salicylic acid-dependent inducible resistance responses.	An extracellular aspartic protease functions in Arabidopsis disease resistance signaling.2004 · DOI: 10.1038/sj.emboj.7600086

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_005071 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006508 proteolysis Biological Process

GO:0009555 pollen development Biological Process

GO:0009846 pollen germination Biological Process

GO:0009860 pollen tube growth Biological Process

GO:0010183 pollen tube guidance Biological Process

GO:0030163 protein catabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0090406 pollen tube Cellular Component

KEGG gene cross-reference

ath:AT1G65240

ath:AT2G17760

ath:AT5G36260

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.426

Rank 1 · TkA01G090390 · TK1151

Extracellular0.205

Rank 2 · TkA01G090390 · TK1151

Lysosome / Vacuole0.126

Rank 3 · TkA01G090390 · TK1151

Endoplasmic reticulum0.120

Rank 4 · TkA01G090390 · TK1151

Cytoplasm0.116

Rank 5 · TkA01G090390 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14543TAXi_N82-267 aa

PF00026Asp82-435 aa

PF21799MurD-like_N226-250 aa

PF14541TAXi_C285-436 aa

PF14543TAXi_N316-329 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G090390	`PF14543`	TAXi_N	82	267	1.2e-41	143.6
TkA01G090390	`PF00026`	Asp	82	435	2e-31	110.3
TkA01G090390	`PF21799`	MurD-like_N	226	250	0.16	13.0
TkA01G090390	`PF14541`	TAXi_C	285	436	1e-24	87.9
TkA01G090390	`PF14543`	TAXi_N	316	329	1.2e-41	143.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q4V3D2`	Arabidopsis thaliana	sp\|Q4V3D2\|ASP36_ARATH Aspartic proteinase 36	38.900%	Swiss-Prot	Medium
`Q9S9K4`	Arabidopsis thaliana	sp\|Q9S9K4\|ASP39_ARATH Aspartic proteinase 39	35.300%	Swiss-Prot	Medium
`Q6XBF8`	Arabidopsis thaliana	sp\|Q6XBF8\|CDR1_ARATH Aspartic proteinase CDR1	29.800%	Swiss-Prot	Low

JBrowse

View in Genome Browser

Gene Card