TkA01G089860 | RubberDandelionOmics

Gene overview

TkA01G089860

Reference: TK1151 Chr: Chr01 Coordinates: 22834490-22837988 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1954 bp · TkA01G089860|TK1151|cDNA

GGAAGAAGACCATGCCATTGGGTTAACCTTGCCAAGTGGGTGAAAAGGGGAGACGTCCTAGTCTCAGGGACGTTGTTATGCTAGTCGTTACGTGTCTGGCCGAGTCGAGGTAGTGGAGCCGACAATGAATGGGGCCGTATCGTTCTAGAGAAACAACTGGTAAGGGGTTGGGGCCGCCTCCCTGATGAGCCAATAGCATGGCGAAACCAGTTGGCATTTGTACGGGAACTTGCGTCCGTGTCCTCCTCTTCCTCGTCGCC...

CDS

Download CDS FASTA

1386 bp · TkA01G089860|TK1151|CDS

ATGGAACGAGGGTTTATCTTCTCTCTATTAGCCGTTTTCTCCGTCATTACCCTCTCCATTTACATCACCACCCACCATTACAATCACAATAACCGCCACCCTTTTATTCCCTCTCCTTCCCCTCCGAATCCCCTCACGTCTAATTCCCACGACAGAATCTGGCCTGAATTGGAGTTCAATTGGAGAATTGTGTTGGCTACAATAATAGGGTTCTTGGGTTCTGCATTTGGTACAGTTGGTGGCGTTGGCGGTGGCGGCAT...

Protein

Download Protein FASTA

461 aa · TkA01G089860|TK1151|PROTEIN

MERGFIFSLLAVFSVITLSIYITTHHYNHNNRHPFIPSPSPPNPLTSNSHDRIWPELEFNWRIVLATIIGFLGSAFGTVGGVGGGGIFVPMLTLIVGFDTKSAAALSKCMIMGASASSVWYNLRVPHPCREVPILDYDLALLFQPMVMLGITFGVALSVVFPYWLITVLTILLFSGTSSRSFLKAIEMWKEETIMKKEMERPREPTFNSRGELLIDTYEPLIPKEEKTSMQVFLFNLRWEKLTALIVVWAAFLALQIIKN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G089860`
TK1151 ID	TkA01G089860
OH-1004 ID	LXL04_032587
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	79.500
Protein coverage (%)	TK1151 99.566 / OH-1004 99.348 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G089860

Location Chr01:22834490-22837988 (-)

Description Similar to At2g36630: Sulfite exporter TauE/SafE family protein 4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g36630`	Sulfite exporter TauE/SafE family protein 4.	No verified direct reference in this release
`At2g25737`	Sulfite exporter TauE/SafE family protein 3.	No verified direct reference in this release
`At4g21250`	Sulfite exporter TauE/SafE family protein 5.	No verified direct reference in this release
`At1g11540`	Sulfite exporter TauE/SafE family protein 1.	No verified direct reference in this release
`At1g61740`	Sulfite exporter TauE/SafE family protein 2.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_032587 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0031464 Cul4A-RING E3 ubiquitin ligase complex Cellular Component

KEGG gene cross-reference

ath:AT1G11540

ath:AT1G61740

ath:AT2G25737

ath:AT2G36630

ath:AT4G21260

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.418

Rank 1 · TkA01G089860 · TK1151

Lysosome / Vacuole0.346

Rank 2 · TkA01G089860 · TK1151

Endoplasmic reticulum0.123

Rank 3 · TkA01G089860 · TK1151

Cytoplasm0.098

Rank 4 · TkA01G089860 · TK1151

Golgi apparatus0.069

Rank 5 · TkA01G089860 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01925TauE67-186 aa

PF29798PROSCOOP22164-180 aa

PF01925TauE274-426 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G089860	`PF01925`	TauE	67	186	7e-25	88.8
TkA01G089860	`PF29798`	PROSCOOP22	164	180	0.076	13.6
TkA01G089860	`PF01925`	TauE	274	426	7e-25	88.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8S9J0`	Arabidopsis thaliana	sp\|Q8S9J0\|TAUE4_ARATH Sulfite exporter TauE/SafE family protein 4	69.300%	Swiss-Prot	High
`Q8L7A0`	Arabidopsis thaliana	sp\|Q8L7A0\|TAUE3_ARATH Sulfite exporter TauE/SafE family protein 3	53.600%	Swiss-Prot	High
`F4JIP9`	Arabidopsis thaliana	sp\|F4JIP9\|TAUE5_ARATH Sulfite exporter TauE/SafE family protein 5	30.300%	Swiss-Prot	Medium
`F4I8X6`	Arabidopsis thaliana	sp\|F4I8X6\|TAUE1_ARATH Sulfite exporter TauE/SafE family protein 1	28.500%	Swiss-Prot	Low
`Q9SYB0`	Arabidopsis thaliana	sp\|Q9SYB0\|TAUE2_ARATH Sulfite exporter TauE/SafE family protein 2	28.900%	Swiss-Prot	Low

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