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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G089410
Reference: TK1151 Chr: Chr01 Coordinates: 22718115-22728834 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

5458 bp · TkA01G089410|TK1151|cDNA

TAAAAAACCATCGCAAGCCACCTGGCAATTATATACGACGTGCTGTCTTCTTCATTCTCACTGCAAATTTTGCGATCCGTTTTCTTCCCTTTCCATCGTCTTCTCTGTTTTCCTTTGATTCAATGCAGTAATGGCATCAAGTTCTGGAAACTCGCTTCCTGCTCCCGAGGCGATTCAGGTTCTGGTTTCATCGCTCGCTGATGAATCCCCAATGGTTAAGCAAGCGTCCATGGCGTCTCTTAAAGCCCTCGCTCCTTTGA...

CDS

Download CDS FASTA

3348 bp · TkA01G089410|TK1151|CDS

ATGAAAGCTTATGTCAGCGACACTGAAGACCTTAAACAAGATCTTTCTTATCAAGAAACATGGGATGATATGATAATCAATTTTCTTGCTGAAACTTTGGATGTTGTTCAAGACACCGATTGGATCATTTCTCTTGGAAATGCTTTTGCAAAACAGTATGAACTTTATACTTCAGATGATGAACATTCTGCACTACTTCACAGATGTCTTGGTATACTTCTTCAAAAAGTTGATAACCGAACTTATGTTCGTGATAAGAT...

Protein

Download Protein FASTA

1115 aa · TkA01G089410|TK1151|PROTEIN

MKAYVSDTEDLKQDLSYQETWDDMIINFLAETLDVVQDTDWIISLGNAFAKQYELYTSDDEHSALLHRCLGILLQKVDNRTYVRDKIDWMYKQANITIPENRLGLAKAMGLVAASHLDTVLDKLKDILDNIGESVLQRFLSFFSDKTKIKDSDDIHAALALMYGYAARYAPSTVIEARIDALVGTNMLSHLLIVRHPSAKQAVITSIDLLGRAVINAAESGISFPLKKRDQLLDYILTLMCRHDEDGFSDLSVELLRTQA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G089410
TK1151 IDTkA01G089410
OH-1004 IDLXL04_005094
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)99.000
Protein coverage (%)TK1151 100.000 / OH-1004 36.795
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G089410
LocationChr01:22718115-22728834 (-)
DescriptionSimilar to SGR6: Protein SHOOT GRAVITROPISM 6
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g36810 Involved in inflorescence stems gravitropism, by modulating vacuolar membrane (VMs) dynamics in gravity-sensing cells (e.g. endodermal cells) during the amyloplast sedimentation process.
A unique HEAT repeat-containing protein SHOOT GRAVITROPISM6 is involved in vacuolar membrane dynamics in gravity-sensing cells of Arabidopsis inflorescence stem.2014 · DOI: 10.1093/pcp/pcu020
Mutations in the SGR4, SGR5 and SGR6 loci of Arabidopsis thaliana alter the shoot gravitropism.1997 · DOI: 10.1093/oxfordjournals.pcp.a029201

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_005094 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009630 gravitropism Biological Process
GO:0009660 amyloplast organization Biological Process
GO:0009959 negative gravitropism Biological Process
GO:0016134 saponin metabolic process Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0009705 plant-type vacuole membrane Cellular Component
GO:0035251 UDP-glucosyltransferase activity Molecular Function
KEGG gene cross-reference
ag:AFN26667
ath:AT2G36810
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.545
Rank 1 · TkA01G089410 · TK1151
Nucleus0.265
Rank 2 · TkA01G089410 · TK1151
Golgi apparatus0.186
Rank 3 · TkA01G089410 · TK1151
Cell membrane0.116
Rank 4 · TkA01G089410 · TK1151
Lysosome / Vacuole0.100
Rank 5 · TkA01G089410 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23210HEAT_Maestro_211-290 aa
PF21047HEAT_Maestro24-124 aa
PF01602Adaptin_N27-74 aa
PF26715HEAT_GCN1_248-118 aa
PF23271HEAT_GCN153-118 aa
PF13646HEAT_277-130 aa
PF24714TOR1L1_N107-131 aa
PF10363RTP1_C1123-153 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G089410PF23210HEAT_Maestro_2112904.1e-43148.3
TkA01G089410PF21047HEAT_Maestro241242.5e-1041.3
TkA01G089410PF01602Adaptin_N27740.0006919.0
TkA01G089410PF26715HEAT_GCN1_2481180.09413.4
TkA01G089410PF23271HEAT_GCN1531184.3e-0834.2
TkA01G089410PF13646HEAT_2771301.7e-0628.9
TkA01G089410PF24714TOR1L1_N1071313.9e-0937.0
TkA01G089410PF10363RTP1_C11231530.001919.0
TkA01G089410PF26715HEAT_GCN1_21331670.09413.4
TkA01G089410PF21047HEAT_Maestro1852122.5e-1041.3
TkA01G089410PF13513HEAT_EZ3013174.3e-1247.0
TkA01G089410PF21047HEAT_Maestro4075822.5e-1041.3
TkA01G089410PF02985HEAT4204427.3e-1657.5
TkA01G089410PF13513HEAT_EZ4214384.3e-1247.0
TkA01G089410PF23271HEAT_GCN14234434.3e-0834.2
TkA01G089410PF13646HEAT_24254381.7e-0628.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4IP13Arabidopsis thalianasp|F4IP13|SHGR6_ARATH Protein SHOOT GRAVITROPISM 668.500%Swiss-ProtHigh

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