TkA01G084030 | RubberDandelionOmics

Gene overview

TkA01G084030

Reference: TK1151 Chr: Chr01 Coordinates: 21474891-21477484 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2495 bp · TkA01G084030|TK1151|cDNA

TAAAAATAAAATAATAACAAATTCGCCATTATATAAACCACCGAGTCCTCTCCTCTCTCCTTCAGGAAACCGCCACTTCACCACCTTCAATCCACCATTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAAAAAACCTGTAATTTATTCTTTCTGATAATGGGGAGTACAGATATTGAGATGAACGGGGAGTTTTGTGTGAAAGGTGATCCGTTGAATTGGGGATTGGCGGCGGAGTCATTGAAGG...

CDS

Download CDS FASTA

2127 bp · TkA01G084030|TK1151|CDS

ATGGGGAGTACAGATATTGAGATGAACGGGGAGTTTTGTGTGAAAGGTGATCCGTTGAATTGGGGATTGGCGGCGGAGTCATTGAAGGGGAGTCATTTAGATGAGGTGAAGCGGATGGTGGCGGAGTTTAGGAAGCCGGTGGTGAGATTAGGTGGAGAGACGTTGACTGTGTCGCAGGTGGCGGCGATTGCTGCTAGTGATAACGCTGCGGTGAAGGTGGAGTTGTCGGAGTCGGCGAGGGCGGGGGTGAAGGCGAGTAG...

Protein

Download Protein FASTA

708 aa · TkA01G084030|TK1151|PROTEIN

MGSTDIEMNGEFCVKGDPLNWGLAAESLKGSHLDEVKRMVAEFRKPVVRLGGETLTVSQVAAIAASDNAAVKVELSESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKEGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKFLNHNVTPFLPLRGTITASGDLVPLSYIAGLLTGRANSKAIGPNGEVLNAEKAFAEAGVHGGFFELQPKEGLALVNGTAVGSG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G084030`
TK1151 ID	TkA01G084030
OH-1004 ID	LXL04_005027
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	99.900
Protein coverage (%)	TK1151 98.870 / OH-1004 57.803 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA01G084030`
Location	Chr01:21474891-21477484 (-)
Description	Similar to PAL1: Phenylalanine ammonia-lyase 1
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_005027` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006559 L-phenylalanine catabolic process Biological Process GO:0009800 cinnamic acid biosynthetic process Biological Process GO:0005737 cytoplasm Cellular Component GO:0032991 protein-containing complex Cellular Component GO:0016597 amino acid binding Molecular Function GO:0016841 ammonia-lyase activity Molecular Function GO:0045548 phenylalanine ammonia-lyase activity Molecular Function
KEGG gene cross-reference	ag:CAA57056 ag:CAA57057 ag:CAA68938 nta:107786762 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.706

Rank 1 · TkA01G084030 · TK1151

Nucleus0.189

Rank 2 · TkA01G084030 · TK1151

Peroxisome0.181

Rank 3 · TkA01G084030 · TK1151

Mitochondrion0.098

Rank 4 · TkA01G084030 · TK1151

Cell membrane0.046

Rank 5 · TkA01G084030 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00221Lyase_aromatic55-531 aa

PF15511CENP-T_C56-101 aa

PF15511CENP-T_C477-505 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G084030	`PF00221`	Lyase_aromatic	55	531	1.4e-151	506.0
TkA01G084030	`PF15511`	CENP-T_C	56	101	0.061	14.2
TkA01G084030	`PF15511`	CENP-T_C	477	505	0.061	14.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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