TkA01G083500 | RubberDandelionOmics

Gene overview

TkA01G083500

Reference: TK1151 Chr: Chr01 Coordinates: 21301682-21304801 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1752 bp · TkA01G083500|TK1151|cDNA

TTTTACTTTTACGCGCCGACGCGGCCTATGAAGAATTTCGTCGTGTCATTATTTAATAAAGGCGAAGATGAATCCTATGGTTGATTGCTTCCCCTTCTCATTCATTTCATACCATCGTTTCTGGGTTCTTTCAAAAGAATATTTTATTTAATTTTGTCTCCATATGTACTAATTGTTTTCAAACTTTGAAACAAGAGAGAAATTTACTTCGAAAAGTCTAATCTTTCAACATTTTCCTTCACTTCTGTTTGTTATCTTCG...

CDS

Download CDS FASTA

1056 bp · TkA01G083500|TK1151|CDS

ATGGTTTTCCATTTCCGATGTTTCTCTTTTCCATATGAACAAGATAGAATGCCTCCCGTATCAACCGCATCACACGACAGCACTTTCCATACCGCAAATTCACATTTTGATGCGACACGAATGAACATCCCAGATCTAAACGTAAACAAAAAACTCACAGTTTTCACCCACGCTGAACTTAAATCCGCCACCAAAAACTTTCACGATTCCAACAAACTTGGGGAAGGTGGATTTGCGATCGTATATAAAGGCACAGTAAA...

Protein

Download Protein FASTA

351 aa · TkA01G083500|TK1151|PROTEIN

MVFHFRCFSFPYEQDRMPPVSTASHDSTFHTANSHFDATRMNIPDLNVNKKLTVFTHAELKSATKNFHDSNKLGEGGFAIVYKGTVKTKKNRPIDIDVAVKQIKPGQQGYKTWVTEVNVLGEINHENLVKLIGLCNEDGQLLLVYEYMPKKSLDGHLSAKSNARLSWGRRLHIAKDAAKGLEHLHNSKIVFRDFKPSNILLDNNWNAKLSDFGFARDGPQDGRTHVSTMVVGTKGYAAPEYVQTGRLTTKIDVWSYGIFL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G083500`
TK1151 ID	TkA01G083500
OH-1004 ID	LXL04_005035
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	97.400
Protein coverage (%)	TK1151 99.430 / OH-1004 43.899 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G083500

Location Chr01:21301682-21304801 (-)

Description Similar to PCRK1: Serine/threonine-protein kinase PCRK1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g09830`	Involved in the activation of early immune responses.	The receptor-like cytoplasmic kinase PCRK1 contributes to pattern-triggered immunity against Pseudomonas syringae in Arabidopsis thaliana.2015 · DOI: 10.1111/nph.13345 Functional characterization of PCRK1, a putative protein kinase with a role in immunity.2015 · DOI: 10.1080/15592324.2015.1063759
`At5g03320`	Functions redundantly with PCRK1 in basal resistance against bacterial pathogens and in regulation of plant immunity.	No verified direct reference in this release
`At3g01300`	Involved in chitin-triggered immune signaling and is required for reactive oxygen species (ROS) production.	Tyrosine phosphorylation of the lectin receptor-like kinase LORE regulates plant immunity.2020 · DOI: 10.15252/embj.2019102856 Receptor-like cytoplasmic kinases PBL34/35/36 are required for CLE peptide-mediated signaling to maintain shoot apical meristem and root apical meristem homeostasis in Arabidopsis.2022 · DOI: 10.1093/plcell/koab315
`At5g15080`	Involved in chitin-triggered immune signaling and is required for reactive oxygen species (ROS) production.	Tyrosine phosphorylation of the lectin receptor-like kinase LORE regulates plant immunity.2020 · DOI: 10.15252/embj.2019102856 Receptor-like cytoplasmic kinases PBL34/35/36 are required for CLE peptide-mediated signaling to maintain shoot apical meristem and root apical meristem homeostasis in Arabidopsis.2022 · DOI: 10.1093/plcell/koab315
`At1g14370`	Involved in disease resistance signaling.	Receptor-like cytoplasmic kinases integrate signaling from multiple plant immune receptors and are targeted by a Pseudomonas syringae effector.2010 · DOI: 10.1016/j.chom.2010.03.007 xopAC-triggered immunity against Xanthomonas depends on Arabidopsis receptor-like cytoplasmic kinase genes PBL2 and RIPK.2013 · DOI: 10.1371/journal.pone.0073469 The Decoy Substrate of a Pathogen Effector and a Pseudokinase Specify Pathogen-Induced Modified-Self Recognition and Immunity in Plants.2015 · DOI: 10.1016/j.chom.2015.08.004 Ligand-triggered allosteric ADP release primes a plant NLR complex.2019 · DOI: 10.1126/science.aav5868

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_005035 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0002221 pattern recognition receptor signaling pathway Biological Process

GO:0006952 defense response Biological Process

GO:0009617 response to bacterium Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0045087 innate immune response Biological Process

GO:0080142 regulation of salicylic acid biosynthetic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009536 plastid Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT3G09830

ath:AT5G03320

ath:AT5G47070

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.627

Rank 1 · TkA01G083500 · TK1151

Cytoplasm0.322

Rank 2 · TkA01G083500 · TK1151

Nucleus0.218

Rank 3 · TkA01G083500 · TK1151

Golgi apparatus0.039

Rank 4 · TkA01G083500 · TK1151

Endoplasmic reticulum0.038

Rank 5 · TkA01G083500 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069Pkinase67-337 aa

PF03109ABC169-106 aa

PF07714PK_Tyr_Ser-Thr70-337 aa

PF10707YrbL-PhoP_reg121-205 aa

PF01636APH130-186 aa

PF03109ABC1142-231 aa

PF14531Kinase-like181-302 aa

PF01636APH189-219 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G083500	`PF00069`	Pkinase	67	337	1e-54	186.4
TkA01G083500	`PF03109`	ABC1	69	106	0.0048	16.8
TkA01G083500	`PF07714`	PK_Tyr_Ser-Thr	70	337	1.7e-49	169.2
TkA01G083500	`PF10707`	YrbL-PhoP_reg	121	205	0.18	12.2
TkA01G083500	`PF01636`	APH	130	186	0.23	11.9
TkA01G083500	`PF03109`	ABC1	142	231	0.0048	16.8
TkA01G083500	`PF14531`	Kinase-like	181	302	0.00013	22.1
TkA01G083500	`PF01636`	APH	189	219	0.23	11.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SF86`	Arabidopsis thaliana	sp\|Q9SF86\|PCRK1_ARATH Serine/threonine-protein kinase PCRK1	55.300%	Swiss-Prot	High
`Q9LZF8`	Arabidopsis thaliana	sp\|Q9LZF8\|PCRK2_ARATH Serine/threonine-protein kinase PCRK2	49.200%	Swiss-Prot	Medium
`Q9SRH7`	Arabidopsis thaliana	sp\|Q9SRH7\|PBL35_ARATH Serine/threonine-protein kinase PBL35	44.900%	Swiss-Prot	Medium
`Q9LFP7`	Arabidopsis thaliana	sp\|Q9LFP7\|PBL34_ARATH Serine/threonine-protein kinase PBL34	44.600%	Swiss-Prot	Medium
`O49839`	Arabidopsis thaliana	sp\|O49839\|PBL2_ARATH Probable serine/threonine-protein kinase PBL2	49.700%	Swiss-Prot	Medium

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