TkA01G079720 | RubberDandelionOmics

Gene overview

TkA01G079720

Reference: TK1151 Chr: Chr01 Coordinates: 20396171-20398590 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

570 bp · TkA01G079720|TK1151|cDNA

ATGGAGTTATCTCCCATTCGGTTTCTAAATCGCACAGACGCACAGTTCCCTTCTCTTCTCCTCTTCTCCTCTTCAGTCGACCGTCTTCAATTTCCAAATCAAACCTCAAGCTGTCAAGCATCGTCGAGCATCTCAGTGTCTCACTCAAGCGTCGCTCACTCTGTCCATCATTCTCGGTTCGAGATTGATACAATTCCTAATTGGAAGTGGCAACTAACATCACTAGTTCTTTTATTTGAGGTAGAATACAAGAGCACTGT...

CDS

Download CDS FASTA

570 bp · TkA01G079720|TK1151|CDS

ATGGAGTTATCTCCCATTCGGTTTCTAAATCGCACAGACGCACAGTTCCCTTCTCTTCTCCTCTTCTCCTCTTCAGTCGACCGTCTTCAATTTCCAAATCAAACCTCAAGCTGTCAAGCATCGTCGAGCATCTCAGTGTCTCACTCAAGCGTCGCTCACTCTGTCCATCATTCTCGGTTCGAGATTGATACAATTCCTAATTGGAAGTGGCAACTAACATCACTAGTTCTTTTATTTGAGGTAGAATACAAGAGCACTGT...

Protein

Download Protein FASTA

189 aa · TkA01G079720|TK1151|PROTEIN

MELSPIRFLNRTDAQFPSLLLFSSSVDRLQFPNQTSSCQASSSISVSHSSVAHSVHHSRFEIDTIPNWKWQLTSLVLLFEVEYKSTVTDSEGQLTSAADLDLCLGATNITSLLHQLRKGFTYSKHLLEEGSFDAAIDGCDGVFHTASPFLTSAADPQKELIEPALKGTLNVLGSCSKASSVKESSSHPH

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G079720`
TK1151 ID	TkA01G079720
OH-1004 ID	LXL04_005154
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	57.400
Protein coverage (%)	TK1151 96.296 / OH-1004 53.226 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G079720

Location Chr01:20396171-20398590 (+)

Description Similar to CCR1: Cinnamoyl-CoA reductase 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g35420`	Involved in the biosynthesis of hydroxylated tetraketide compounds that serve as sporopollenin precursors (the main constituents of exine).	An anther-specific dihydroflavonol 4-reductase-like gene (DRL1) is essential for male fertility in Arabidopsis.2009 · DOI: 10.1111/j.1469-8137.2008.02692.x Analysis of TETRAKETIDE α-PYRONE REDUCTASE function in Arabidopsis thaliana reveals a previously unknown, but conserved, biochemical pathway in sporopollenin monomer biosynthesis.2010 · DOI: 10.1105/tpc.110.080036

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_005154 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0007623 circadian rhythm Biological Process

GO:0009409 response to cold Biological Process

GO:0009699 phenylpropanoid biosynthetic process Biological Process

GO:0009809 lignin biosynthetic process Biological Process

GO:0010597 green leaf volatile biosynthetic process Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0000166 nucleotide binding Molecular Function

GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor Molecular Function

GO:0016621 cinnamoyl-CoA reductase activity Molecular Function

KEGG gene cross-reference

ath:AT1G15950

mtr:11424763

mtr:11427940

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.411

Rank 1 · TkA01G079720 · TK1151

Nucleus0.397

Rank 2 · TkA01G079720 · TK1151

Endoplasmic reticulum0.108

Rank 3 · TkA01G079720 · TK1151

Plastid0.104

Rank 4 · TkA01G079720 · TK1151

Cell membrane0.092

Rank 5 · TkA01G079720 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23520Microp_apicomplexa_1139-82 aa

PF010733Beta_HSD127-179 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G079720	`PF23520`	Microp_apicomplexa_11	39	82	0.0074	17.2
TkA01G079720	`PF01073`	3Beta_HSD	127	179	0.0069	16.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q500U8`	Arabidopsis thaliana	sp\|Q500U8\|TKPR1_ARATH Tetraketide alpha-pyrone reductase 1	61.400%	Swiss-Prot	Low

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