TkA01G076800 | RubberDandelionOmics

Gene overview

TkA01G076800

Reference: TK1151 Chr: Chr01 Coordinates: 19628669-19633590 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1786 bp · TkA01G076800|TK1151|cDNA

CAGAACTTAAAAATATATGTTGTTTTAACTTTTAAGGCATTGACCTTGGCTTTTAGATAAAACAAAGCCGGTCGTTTCATTTGCAAAAATCCAACACTTCTGATGGCGACGCCCGTCTCCCGCAAGAGAAAATTGGACGTCGAAGACGATGAACTTCTGATCCTCCTCTCCGAGCAACGCCGTGAACTGACTGCCGCTATCACTGCCGATTCCGACCTTGATTTCGCCTTCCAACTGCAAATGCAGGAAGCGATAAAAGT...

CDS

Download CDS FASTA

852 bp · TkA01G076800|TK1151|CDS

ATGGCGACGCCCGTCTCCCGCAAGAGAAAATTGGACGTCGAAGACGATGAACTTCTGATCCTCCTCTCCGAGCAACGCCGTGAACTGACTGCCGCTATCACTGCCGATTCCGACCTTGATTTCGCCTTCCAACTGCAAATGCAGGAAGCGATAAAAGTCTCTTTAACCTCTCAACCTTCTTCATCTTCGTCTTCCTCACACCAACCATTCCTCCTCCTTAACGAAGTCACAGACGCCCCTTCCGGCATCGCTCATCTCGT...

Protein

Download Protein FASTA

283 aa · TkA01G076800|TK1151|PROTEIN

MATPVSRKRKLDVEDDELLILLSEQRRELTAAITADSDLDFAFQLQMQEAIKVSLTSQPSSSSSSSHQPFLLLNEVTDAPSGIAHLVAEEIDNFERERSDRAVVEAEARNVQENLNRLIHDQIFARQIKGVPDDEWRKAGDNFEKPYGLSPSSIDEAFRVYFKGLVSDETVMNAKMPFAGIGVAICDTNDCCVFELRKPYLLGGNEGEGDLVELKALIEALNTAVTLGLRRVHIFCDSNSSYQYLTGKGHHHTDNNIVAL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G076800`
TK1151 ID	TkA01G076800
OH-1004 ID	LXL04_005197
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	93.500
Protein coverage (%)	TK1151 97.527 / OH-1004 25.870 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA01G076800`
Location	Chr01:19628669-19633590 (+)
Description	Similar to rbrA: Probable E3 ubiquitin-protein ligase rbrA
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_005197` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0000209 protein polyubiquitination Biological Process GO:0006511 ubiquitin-dependent protein catabolic process Biological Process GO:0009738 abscisic acid-activated signaling pathway Biological Process GO:0009740 gibberellic acid mediated signaling pathway Biological Process GO:0009788 negative regulation of abscisic acid-activated signaling pathway Biological Process GO:0010431 seed maturation Biological Process GO:0010476 gibberellin mediated signaling pathway Biological Process GO:0016567 protein ubiquitination Biological Process GO:0030435 sporulation resulting in formation of a cellular spore Biological Process GO:0140547 acquisition of seed longevity Biological Process GO:0000151 ubiquitin ligase complex Cellular Component GO:0005634 nucleus Cellular Component
KEGG gene cross-reference	ath:AT2G26130 ath:AT4G01020 ddi:DDB_G0286961 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.596

Rank 1 · TkA01G076800 · TK1151

Cytoplasm0.397

Rank 2 · TkA01G076800 · TK1151

Cell membrane0.076

Rank 3 · TkA01G076800 · TK1151

Endoplasmic reticulum0.061

Rank 4 · TkA01G076800 · TK1151

Plastid0.031

Rank 5 · TkA01G076800 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00075RNase_H23-38 aa

PF160782-oxogl_dehyd_N151-167 aa

PF13456RVT_3174-263 aa

PF00075RNase_H212-258 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G076800	`PF00075`	RNase_H	23	38	0.022	15.7
TkA01G076800	`PF16078`	2-oxogl_dehyd_N	151	167	0.095	13.0
TkA01G076800	`PF13456`	RVT_3	174	263	1.1e-12	48.7
TkA01G076800	`PF00075`	RNase_H	212	258	0.022	15.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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