TkA01G074600 | RubberDandelionOmics

Gene overview

TkA01G074600

Reference: TK1151 Chr: Chr01 Coordinates: 19118353-19121616 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2179 bp · TkA01G074600|TK1151|cDNA

AGAAATAAACAAAAAAGGCCTAATTTTTAAGTTCCCAAGTTCGAACCCTACCTCCGAACGAATAGCGAACACCCCTCCTCTCGTTCTCCTTCTCCGATCGGTAGACGCCGGCGCAAGCTCCCCCCCCCCCCCCCCCCCCCCCCGAAACGCCGACGCCGACGCTGGTTTTCCTCTCGCCGGAAGTTTGTTTTCCTCTCCCCGGTAGCTCGTGTGGAACCGCTGCAACCAGTCGCGTGTCCTTCTTCTTCCAGTCGCCATCA...

CDS

Download CDS FASTA

1689 bp · TkA01G074600|TK1151|CDS

ATGTCTTCAACAGATCAAACTCAGCCACCTGATTCAGGGGCGGTGACAGTGGAACCTACCCCCGCCCCTGAAACCACCACACCCCTCAACCCCACGGAACAACCACCACCACCACCATCATCAGAACCACCACCACCAACATCCACTACACCACCTCCCACCACCACAACCTCCACCACCTCACCTGAACCACCACAACCACAACAATCTCAACCACAACCACAACCCCTCTCCACCACATCATCATTACAACCCCTCCC...

Protein

Download Protein FASTA

562 aa · TkA01G074600|TK1151|PROTEIN

MSSTDQTQPPDSGAVTVEPTPAPETTTPLNPTEQPPPPPSSEPPPPTSTTPPPTTTTSTTSPEPPQPQQSQPQPQPLSTTSSLQPLPPYTPTPNPRHPTPPVSQPPLQPQPLNPMLRTPFSRPWQQKPSPFPHFSSITTAPTSSLTSIPPSQRGGMAIGVPAPQPPTSFSSLTPPSFSSQFTGLNRTGPESTTTTTTTTPQVRQSISGMMGSLGSGSSLRPGGVTGSNMQRPMQASHRPQTGGISNQDHGLLRGPSVGSP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G074600`
TK1151 ID	TkA01G074600
OH-1004 ID	LXL04_005232
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	95.800
Protein coverage (%)	TK1151 100.000 / OH-1004 83.828 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G074600

Location Chr01:19118353-19121616 (+)

Description Similar to TAF12: Transcription initiation factor TFIID subunit 12

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g10070`	TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_005232 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006282 regulation of DNA repair Biological Process

GO:0006352 DNA-templated transcription initiation Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0006357 regulation of transcription by RNA polymerase II Biological Process

GO:0006366 transcription by RNA polymerase II Biological Process

GO:0006367 transcription initiation at RNA polymerase II promoter Biological Process

GO:0042789 mRNA transcription by RNA polymerase II Biological Process

GO:0043484 regulation of RNA splicing Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0045944 positive regulation of transcription by RNA polymerase II Biological Process

GO:0051123 RNA polymerase II preinitiation complex assembly Biological Process

GO:0060261 positive regulation of transcription initiation by RNA polymerase II Biological Process

KEGG gene cross-reference

ath:AT3G10070

bta:614227

hsa:6883

mmu:66464

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.974

Rank 1 · TkA01G074600 · TK1151

Cytoplasm0.146

Rank 2 · TkA01G074600 · TK1151

Cell membrane0.011

Rank 3 · TkA01G074600 · TK1151

Mitochondrion0.010

Rank 4 · TkA01G074600 · TK1151

Endoplasmic reticulum0.006

Rank 5 · TkA01G074600 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03847TFIID_20kDa413-486 aa

PF00125Histone416-473 aa

PF02291TFIID-31kDa416-480 aa

PF00808CBFD_NFYB_HMF421-473 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G074600	`PF03847`	TFIID_20kDa	413	486	2.3e-33	115.2
TkA01G074600	`PF00125`	Histone	416	473	0.00086	20.4
TkA01G074600	`PF02291`	TFIID-31kDa	416	480	0.23	12.2
TkA01G074600	`PF00808`	CBFD_NFYB_HMF	421	473	0.00026	21.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SR71`	Arabidopsis thaliana	sp\|Q9SR71\|TAF12_ARATH Transcription initiation factor TFIID subunit 12	40.800%	Swiss-Prot	Medium

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