Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1240 bp · TkA01G072200|TK1151|cDNA
GGAAGAGAGCTTTTTTGACTCTTGAGTTCATTCCCTCGAATCAACAAAAAATCTTAAACATTTACAGGCTTTAGGACTTAGGAGTATCAAATTGGAAAACCCCTTACGATCATGGATCATCGCCTTCGTTCTAGAGGAGAAAAGAAGGTTTTCTCTGGGTTTACAGCAGCCGAGGCCAGTCATCACAACTTTGTCTTTATTACTCTGTTTCTTCATATGACGCTTTAATTTCTCGACTATAATTCCATTTAAAGCTGTCA...
849 bp · TkA01G072200|TK1151|CDS
ATGTATGTTTCGTATACGGTGTTTCGGCATCACTATTGCTTAAATTCGCCTTTTTATAGCGAATTTTTCGATTTGTTCATCCGGATGGAAAAAATGGAGAAAGTATTAAGAGAGTCACGGGAAATTCCAGGTCCTAATGTCTGTAAGATATTGGCAAAAGGATTCAACCGTTCTGCAGGTCGTGCTGGAAAACCTATCTTAAAATGGACCAATATCCAAAGTTGGTTAACTGAAAGGCAGCAAGATCTCATGTCCAAAGA...
Protein
Download Protein FASTA283 aa · TkA01G072200|TK1151|PROTEIN
MYVSYTVFRHHYCLNSPFYSEFFDLFIRMEKMEKVLRESREIPGPNVCKILAKGFNRSAGRAGKPILKWTNIQSWLTERQQDLMSKDTSLTDLNKLPAVQHAYTLKNVNDTSDISKGEIVVDLSKLEFEAKSSDNAWYDVEVFITHRFTSIGPEVLVRYVGFGTEEDEWVHVKNVRERSIPFEHSECHKVMIGDTVLCFQEKTDQARYYDAQVIDIQRKFHDIRGCRCIFLIRYEHDGSECSVEEIMLPAGILDAEYPSS...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA01G072200 |
|---|---|
| TK1151 ID | TkA01G072200 |
| OH-1004 ID | LXL04_001948 |
| Relationship / confidence | Multi Source To Oh1004 / Complex relationship |
| Protein identity (%) | 60.500 |
| Protein coverage (%) | TK1151 42.756 / OH-1004 16.578Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA01G072200 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr01:18558396-18560681 (+) | |||||||||
| Description | Similar to SHH2: Protein SAWADEE HOMEODOMAIN HOMOLOG 2 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006346 DNA methylation-dependent constitutive heterochromatin formation Biological Process GO:0007155 cell adhesion Biological Process GO:0007339 binding of sperm to zona pellucida Biological Process GO:0031047 regulatory ncRNA-mediated gene silencing Biological Process GO:0040029 epigenetic regulation of gene expression Biological Process GO:2000359 regulation of binding of sperm to zona pellucida Biological Process GO:0005615 extracellular space Cellular Component GO:0005634 nucleus Cellular Component GO:0005886 plasma membrane Cellular Component GO:0031012 extracellular matrix Cellular Component GO:0003677 DNA binding Molecular Function GO:0003682 chromatin binding Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT1G15215 ath:AT3G18380 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF16719SAWADEE125-244 aaPF11717Tudor-knot133-176 aaPF15057DUF4537176-219 aaPF11717Tudor-knot192-219 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA01G072200 | PF16719 | SAWADEE | 125 | 244 | 5.3e-40 | 137.1 |
| TkA01G072200 | PF11717 | Tudor-knot | 133 | 176 | 0.0089 | 16.6 |
| TkA01G072200 | PF15057 | DUF4537 | 176 | 219 | 0.024 | 15.4 |
| TkA01G072200 | PF11717 | Tudor-knot | 192 | 219 | 0.0089 | 16.6 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.