TkA01G072010 | RubberDandelionOmics

Gene overview

TkA01G072010

Reference: TK1151 Chr: Chr01 Coordinates: 18495294-18496759 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

705 bp · TkA01G072010|TK1151|cDNA

ATGAGTAGCATCCAAACCCCCAACAACAAGCTGCACCAAATCATAAACCACCTGCAGTCCCGTCCCAACCAAGATGGTATCAGGAACAGCATCGAAAAGTTGGCTCTTGCGGCCACCGTCTATATGATTTGGCGAGAGAGGAACTCCAGGCATCATACGGGAAATCAAATCCCTCCTACTGTTCTTGCTAAAGAGATAGCTGTCACCCTCAAGGCCCGCCTTTGCAGCATGCCCATGAAATGGTCAAAAACAATGGAAGC...

CDS

Download CDS FASTA

705 bp · TkA01G072010|TK1151|CDS

ATGAGTAGCATCCAAACCCCCAACAACAAGCTGCACCAAATCATAAACCACCTGCAGTCCCGTCCCAACCAAGATGGTATCAGGAACAGCATCGAAAAGTTGGCTCTTGCGGCCACCGTCTATATGATTTGGCGAGAGAGGAACTCCAGGCATCATACGGGAAATCAAATCCCTCCTACTGTTCTTGCTAAAGAGATAGCTGTCACCCTCAAGGCCCGCCTTTGCAGCATGCCCATGAAATGGTCAAAAACAATGGAAGC...

Protein

Download Protein FASTA

234 aa · TkA01G072010|TK1151|PROTEIN

MSSIQTPNNKLHQIINHLQSRPNQDGIRNSIEKLALAATVYMIWRERNSRHHTGNQIPPTVLAKEIAVTLKARLCSMPMKWSKTMEAVYQEWKLPRPTTWPVNNYRVPRSVGLGRRDSTAAFPDQANCDLPRGDQDLQSLISDFEAKGLTERDMVALSGAHTIGQSRCAAFRARIHGNGSAIEANFATTRRRSCPFSGGEGDQIMAPLDLVTPNSFDNNYFRNLVQRRGLLHSD

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G072010`
TK1151 ID	TkA01G072010
OH-1004 ID	LXL04_011123
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	98.400
Protein coverage (%)	TK1151 53.419 / OH-1004 35.411 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G072010

Location Chr01:18495294-18496759 (-)

Description Similar to Lignin-forming anionic peroxidase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g05340`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release
`At1g14540`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_011123 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006979 response to oxidative stress Biological Process

GO:0042744 hydrogen peroxide catabolic process Biological Process

GO:0071456 cellular response to hypoxia Biological Process

GO:0005576 extracellular region Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0004601 peroxidase activity Molecular Function

GO:0020037 heme binding Molecular Function

GO:0046872 metal ion binding Molecular Function

GO:0140825 lactoperoxidase activity Molecular Function

KEGG gene cross-reference

ath:AT1G14540

ath:AT1G14550

nsy:104248753

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.369

Rank 1 · TkA01G072010 · TK1151

Cytoplasm0.193

Rank 2 · TkA01G072010 · TK1151

Cell membrane0.146

Rank 3 · TkA01G072010 · TK1151

Nucleus0.104

Rank 4 · TkA01G072010 · TK1151

Mitochondrion0.079

Rank 5 · TkA01G072010 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00141peroxidase108-234 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G072010	`PF00141`	peroxidase	108	234	4.2e-33	115.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FLC0`	Arabidopsis thaliana	sp\|Q9FLC0\|PER52_ARATH Peroxidase 52	59.200%	Swiss-Prot	Medium
`Q9LE15`	Arabidopsis thaliana	sp\|Q9LE15\|PER4_ARATH Peroxidase 4	56.500%	Swiss-Prot	Medium

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