TkA01G071130 | RubberDandelionOmics

Gene overview

TkA01G071130

Reference: TK1151 Chr: Chr01 Coordinates: 18218074-18220430 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2171 bp · TkA01G071130|TK1151|cDNA

TTATTGTCACTTTTTAGTTATTGGGAATATATATGAGATGCTACATTTCTCCTCTCACAATTGTAAGAAGCTTCGTCCAAATTTGTCGTGATCGTGCGTTGTCCATGGATGAGTGATTAGGGTTTTATTCAATAAATTAGTCAAATTTCACTTCACCCCGTAACTGGTACCAATGTCGAAAATTCAATTTTGACAACCACGAAATTGCAGGTTTCTGATTCACATTTTAAATACCAAGGCGACACTTCCTTTTTCCCAAC...

CDS

Download CDS FASTA

1539 bp · TkA01G071130|TK1151|CDS

ATGAGTGAAGTTACAGAAGTCAAACCCTTGATTTCACAATCGTCGTCTTCAGCTCTTCCTGATTTCAAAAAATCCGTGAAGCTCAAGTATGTAAAATTAGGTTACCACCATCTAATCACCCATGGAATGTACCTCTTCTTATCTCCTCTTGTTATCGTTCTCGCTGCTCAATTATCCACCTTCTCTCTCCAAGACGTTTACGTCGTTTGGGACCATCTCCGATTCAATCTCATATCAGTCGTCGTATGCTCCACCCTTCT...

Protein

Download Protein FASTA

512 aa · TkA01G071130|TK1151|PROTEIN

MSEVTEVKPLISQSSSSALPDFKKSVKLKYVKLGYHHLITHGMYLFLSPLVIVLAAQLSTFSLQDVYVVWDHLRFNLISVVVCSTLLVFLSTLYFLTRPRPIYLVNFSCYKPEEDRKCTRQKFLNCSTSTGTFTDQSLEFQKKILERSGLGESTYLPEAVLRIPPNPSMEEARKEAELVMFGAIDELLSKTSVKPKDIGILIVNCSLFNPTPSLTSMIVNHYKLRGNILSFNLGGMGCSAGLIAIDLAKDLLQVNPNSYA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G071130`
TK1151 ID	TkA01G071130
OH-1004 ID	LXL04_022885
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	77.100
Protein coverage (%)	TK1151 97.266 / OH-1004 96.505 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G071130

Location Chr01:18218074-18220430 (-)

Description Similar to KCS11: 3-ketoacyl-CoA synthase 11

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g26640`	Active on both saturated and mono-unsaturated acyl chains C16 to C20.	Substrate specificity of Arabidopsis 3-ketoacyl-CoA synthases.2006 · DOI: 10.1016/j.bbrc.2006.05.162
`At5g43760`	Mediates the synthesis of VLCFAs from 22 to 26 carbons in length (e.g. C22, C24, C26).	Specific and differential inhibition of very-long-chain fatty acid elongases from Arabidopsis thaliana by different herbicides.2004 · DOI: 10.1073/pnas.0404600101
`At1g04220`	Mediates the synthesis of VLCFAs from 22 to 26 carbons in length (e.g. C22, C24, C26).	Specific and differential inhibition of very-long-chain fatty acid elongases from Arabidopsis thaliana by different herbicides.2004 · DOI: 10.1073/pnas.0404600101 The DAISY gene from Arabidopsis encodes a fatty acid elongase condensing enzyme involved in the biosynthesis of aliphatic suberin in roots and the chalaza-micropyle region of seeds.2009 · DOI: 10.1111/j.1365-313x.2008.03674.x Two Arabidopsis 3-ketoacyl CoA synthase genes, KCS20 and KCS2/DAISY, are functionally redundant in cuticular wax and root suberin biosynthesis, but differentially controlled by osmotic stress.2009 · DOI: 10.1111/j.1365-313x.2009.03973.x
`At1g19440`	3-ketoacyl-CoA synthase 4.	No verified direct reference in this release
`At2g16280`	Involved in the elongation of C22 to C24 fatty acids, which are precursors for the biosynthesis of cuticular waxes, aliphatic suberins, and membrane lipids, including sphingolipids and phospholipids.	Arabidopsis 3-ketoacyl-coenzyme a synthase9 is involved in the synthesis of tetracosanoic acids as precursors of cuticular waxes, suberins, sphingolipids, and phospholipids.2013 · DOI: 10.1104/pp.112.210450

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_022885 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000038 very long-chain fatty acid metabolic process Biological Process

GO:0006633 fatty acid biosynthetic process Biological Process

GO:0006970 response to osmotic stress Biological Process

GO:0009409 response to cold Biological Process

GO:0009416 response to light stimulus Biological Process

GO:0009611 response to wounding Biological Process

GO:0010345 suberin biosynthetic process Biological Process

GO:0160062 cutin-based cuticle development Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0016020 membrane Cellular Component

KEGG gene cross-reference

ath:AT1G04220

ath:AT1G19440

ath:AT2G16280

ath:AT2G26640

ath:AT5G43760

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.813

Rank 1 · TkA01G071130 · TK1151

Cell membrane0.066

Rank 2 · TkA01G071130 · TK1151

Cytoplasm0.064

Rank 3 · TkA01G071130 · TK1151

Nucleus0.063

Rank 4 · TkA01G071130 · TK1151

Golgi apparatus0.061

Rank 5 · TkA01G071130 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08392FAE1_CUT1_RppA94-383 aa

PF08541ACP_syn_III_C188-202 aa

PF00195Chal_sti_synt_N219-296 aa

PF08545ACP_syn_III237-302 aa

PF08541ACP_syn_III_C400-480 aa

PF02797Chal_sti_synt_C402-479 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G071130	`PF08392`	FAE1_CUT1_RppA	94	383	2.9e-142	473.9
TkA01G071130	`PF08541`	ACP_syn_III_C	188	202	6.7e-11	42.9
TkA01G071130	`PF00195`	Chal_sti_synt_N	219	296	0.0011	19.2
TkA01G071130	`PF08545`	ACP_syn_III	237	302	0.082	13.5
TkA01G071130	`PF08541`	ACP_syn_III_C	400	480	6.7e-11	42.9
TkA01G071130	`PF02797`	Chal_sti_synt_C	402	479	6.8e-08	33.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O48780`	Arabidopsis thaliana	sp\|O48780\|KCS11_ARATH 3-ketoacyl-CoA synthase 11	78.800%	Swiss-Prot	High
`Q9FG87`	Arabidopsis thaliana	sp\|Q9FG87\|KCS20_ARATH 3-ketoacyl-CoA synthase 20	72.100%	Swiss-Prot	High
`Q5XEP9`	Arabidopsis thaliana	sp\|Q5XEP9\|KCS2_ARATH 3-ketoacyl-CoA synthase 2	71.300%	Swiss-Prot	High
`Q9LN49`	Arabidopsis thaliana	sp\|Q9LN49\|KCS4_ARATH 3-ketoacyl-CoA synthase 4	66.700%	Swiss-Prot	High
`Q9SIX1`	Arabidopsis thaliana	sp\|Q9SIX1\|KCS9_ARATH 3-ketoacyl-CoA synthase 9	65.600%	Swiss-Prot	High

JBrowse

View in Genome Browser

Gene Card