TkA01G068120 | RubberDandelionOmics

Gene overview

TkA01G068120

Reference: TK1151 Chr: Chr01 Coordinates: 17469598-17473940 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2219 bp · TkA01G068120|TK1151|cDNA

ATATAGAAATATCACAAAATATAGAGTGGTTTAAGAGTCTCTTTCCCGTGTATATAATACGCACCGTTTTCGTCTTCTTTCGGCCTGCCCGAAACAAAATTTGCTCATCACCCATTCTCTCTTTTCTGTGTCCGTATTCTGTACACGTTCATTACACAGCAAGAAAAACAAATCAAACTCTCCAAATTCCGACTTTTTTTCTTCGAATCCATCACCCAAATCCGCCATGATCATCGCATGCAAGTGGTATTAATCGACAG...

CDS

Download CDS FASTA

1431 bp · TkA01G068120|TK1151|CDS

ATGATGGACATGAGCGATTACCCAATCCTCAATAAACTAATCGCCGCCGTGAAGAAACCATCATGGGCGTTTCCGCTGCTTCTCTTCACGCTCGTCGTCATTCTCAGCCTTCAAATCACCACCAATGAATCCGGGTTCCCGGAACGCCCCGTTTCCGATCCGGGTATTGCGTTTGAGCTCTTTGGGTCGGATACATGCGACGGGTCGTTGCCGGCGAGGGAGTTCAAGGCGTCGATTGTGGAATTCGGTGGTGTCGGTGA...

Protein

Download Protein FASTA

476 aa · TkA01G068120|TK1151|PROTEIN

MMDMSDYPILNKLIAAVKKPSWAFPLLLFTLVVILSLQITTNESGFPERPVSDPGIAFELFGSDTCDGSLPAREFKASIVEFGGVGDGVTSNTAAFSAAMKKMRSFEGKGGAQLNVPKGRWVTGSFNLTSNFTLFLEEGAVIMGSEDPKEWPIIEPLPSYGRGRERLGGRHISLIHGDGLTNVVITGKNGTIDARGKMWWALWWNRTLEHTRGHLLEIMNSRNILISNLTLRNSPFWTIHPVYCSNVVIKDMTILAPLNA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G068120`
TK1151 ID	TkA01G068120
OH-1004 ID	LXL04_005298
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA01G068120`
Location	Chr01:17469598-17473940 (+)
Description	Similar to GSVIVT00026920001: Probable polygalacturonase
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_005298` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0005975 carbohydrate metabolic process Biological Process GO:0009830 cell wall modification involved in abscission Biological Process GO:0009901 anther dehiscence Biological Process GO:0010047 fruit dehiscence Biological Process GO:0010227 floral organ abscission Biological Process GO:0045490 pectin catabolic process Biological Process GO:0071555 cell wall organization Biological Process GO:0005576 extracellular region Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005886 plasma membrane Cellular Component GO:0009505 plant-type cell wall Cellular Component GO:0016020 membrane Cellular Component
KEGG gene cross-reference	ath:AT2G41850 ath:AT3G15720 ath:AT3G57510 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.388

Rank 1 · TkA01G068120 · TK1151

Lysosome / Vacuole0.183

Rank 2 · TkA01G068120 · TK1151

Cell membrane0.149

Rank 3 · TkA01G068120 · TK1151

Cytoplasm0.114

Rank 4 · TkA01G068120 · TK1151

Endoplasmic reticulum0.099

Rank 5 · TkA01G068120 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12708Pect-lyase_RHGA_epim78-350 aa

PF00295Glyco_hydro_28174-452 aa

PF24405Pua-like190-250 aa

PF13229Beta_helix205-310 aa

PF13229Beta_helix296-369 aa

PF12708Pect-lyase_RHGA_epim299-369 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G068120	`PF12708`	Pect-lyase_RHGA_epim	78	350	3.3e-07	31.0
TkA01G068120	`PF00295`	Glyco_hydro_28	174	452	8.6e-40	137.5
TkA01G068120	`PF24405`	Pua-like	190	250	0.16	12.6
TkA01G068120	`PF13229`	Beta_helix	205	310	5.9e-05	23.4
TkA01G068120	`PF13229`	Beta_helix	296	369	5.9e-05	23.4
TkA01G068120	`PF12708`	Pect-lyase_RHGA_epim	299	369	3.3e-07	31.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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