TkA01G066230 | RubberDandelionOmics

Gene overview

TkA01G066230

Reference: TK1151 Chr: Chr01 Coordinates: 16931045-16934110 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1630 bp · TkA01G066230|TK1151|cDNA

GGGATTTTCAAATTCAGCTGAAAACAGATCTCTAGTGCTATTCAGTATTCACCATCAGGTTGTTAGCAGTCCCTTCCCTTCGAAGCAAGCTTTAGATTCTCCTACAGAGACTTGATTTGATTTGTGTGATTTCCGTCACGGATTCGATCGATTAACCAAGCGAAATCTGTAATCAGTTATCCGATATGACCAGTTTTCTCATCGCTCTTTCATAATTCAATTGAAAGGTTTGAATTCGTTCACATAAACCAAGGATTTGG...

CDS

Download CDS FASTA

1068 bp · TkA01G066230|TK1151|CDS

ATGGATAACGGCCCTCCATTCTACAGGGAGGGCTTGCCAACGACAATATCTAGAACAGAAAAACAACGTTGGAGATCATCAGCGTCATCATTAAAAAGTTCTTCTTCTAGACCTTCAATTCTCTTGGCGTTCTTCTCTTGTCTCGCTTGGCTTTACATAGCCGGCAGGTTATGGCAAGATGCAGAGAACAGGACGTTACTAGCTAATCTGCTCATTAAGAATTCTTCCGAGAGACCAAAAGTTCTTACTGTTGAAGACAA...

Protein

Download Protein FASTA

355 aa · TkA01G066230|TK1151|PROTEIN

MDNGPPFYREGLPTTISRTEKQRWRSSASSLKSSSSRPSILLAFFSCLAWLYIAGRLWQDAENRTLLANLLIKNSSERPKVLTVEDKLMVLGCKDLERRIVETEMEITLAKSQGFLNNQLKSSSNKKLLAVIGIYTGFGSKLRRNSFRGSWIPDGDSLKKLEERGIVIRFVIGRSPNRGDSLDRNIDEENRTTKDFLILGAHEEADEESAKKAKFFFSTAVQNWDAEFYVKVDNNINLNLDGLIELLETRRGQDSLYIGC...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G066230`
TK1151 ID	TkA01G066230
OH-1004 ID	LXL04_005325
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.100
Protein coverage (%)	TK1151 96.056 / OH-1004 95.251 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G066230

Location Chr01:16931045-16934110 (-)

Description Similar to HPGT3: Hydroxyproline O-galactosyltransferase HPGT3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g25300`	Possesses hydroxyproline O-galactosyltransferase activity.	Identification of three potent hydroxyproline O-galactosyltransferases in Arabidopsis.2015 · DOI: 10.1111/tpj.12764
`At4g32120`	Possesses hydroxyproline O-galactosyltransferase activity.	Identification of three potent hydroxyproline O-galactosyltransferases in Arabidopsis.2015 · DOI: 10.1111/tpj.12764
`At5g53340`	Possesses hydroxyproline O-galactosyltransferase activity.	No verified direct reference in this release
`At1g33430`	Beta-1,3-galactosyltransferase that transfers galactose from UDP-galactose to substrates with a terminal glycosyl residue.	No verified direct reference in this release
`At2g32430`	Beta-1,3-galactosyltransferase that transfers galactose from UDP-galactose to substrates with a terminal glycosyl residue.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_005325 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009101 glycoprotein biosynthetic process Biological Process

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0010208 pollen wall assembly Biological Process

GO:0010405 arabinogalactan protein metabolic process Biological Process

GO:0030244 cellulose biosynthetic process Biological Process

GO:0180062 protein O-linked glycosylation via galactose Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005768 endosome Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005797 Golgi medial cisterna Cellular Component

GO:0005802 trans-Golgi network Cellular Component

GO:0008378 galactosyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT1G05170

ath:AT1G32930

ath:AT2G25300

ath:AT4G32120

ath:AT5G53340

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.823

Rank 1 · TkA01G066230 · TK1151

Cell membrane0.068

Rank 2 · TkA01G066230 · TK1151

Endoplasmic reticulum0.059

Rank 3 · TkA01G066230 · TK1151

Extracellular0.046

Rank 4 · TkA01G066230 · TK1151

Cytoplasm0.041

Rank 5 · TkA01G066230 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13334DUF409435-113 aa

PF01762Galactosyl_T67-89 aa

PF01762Galactosyl_T143-337 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G066230	`PF13334`	DUF4094	35	113	3.7e-07	31.2
TkA01G066230	`PF01762`	Galactosyl_T	67	89	3.8e-32	112.4
TkA01G066230	`PF01762`	Galactosyl_T	143	337	3.8e-32	112.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q5XEZ1`	Arabidopsis thaliana	sp\|Q5XEZ1\|B3GT9_ARATH Hydroxyproline O-galactosyltransferase HPGT3	73.600%	Swiss-Prot	High
`Q94A05`	Arabidopsis thaliana	sp\|Q94A05\|B3GTA_ARATH Hydroxyproline O-galactosyltransferase HPGT2	69.900%	Swiss-Prot	High
`Q94F27`	Arabidopsis thaliana	sp\|Q94F27\|B3GTB_ARATH Hydroxyproline O-galactosyltransferase HPGT1	43.500%	Swiss-Prot	Medium
`Q9C809`	Arabidopsis thaliana	sp\|Q9C809\|B3GT8_ARATH Probable beta-1,3-galactosyltransferase 8	44.800%	Swiss-Prot	Medium
`Q9ZV71`	Arabidopsis thaliana	sp\|Q9ZV71\|B3GT3_ARATH Probable beta-1,3-galactosyltransferase 3	43.300%	Swiss-Prot	Medium

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