TkA01G061690 | RubberDandelionOmics

Gene overview

TkA01G061690

Reference: TK1151 Chr: Chr01 Coordinates: 15898637-15899517 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

652 bp · TkA01G061690|TK1151|cDNA

GGCTAATGCTAGTAATTGGGAATCAGAAGTTCACTCGATGCTTCAACGGTCTTCGATGAATTCGTTCTCAAGTTTTTCGAATTCGTAGCAGAAAACGTTATCCCAAAAGAACTTGGAATGAAGTTCACGACAGTGGAAGGCGATGGAGGCGTTGGATCAATCAAACTCATGAGCTTCTTGGATGATCAATTTCCGAGTGTGAAGTATAAGGTTAAATTGATCGATTTAGACAACTTTACGTACAAGTTGGCGATGATTAA...

CDS

Download CDS FASTA

420 bp · TkA01G061690|TK1151|CDS

ATGAAGTTCACGACAGTGGAAGGCGATGGAGGCGTTGGATCAATCAAACTCATGAGCTTCTTGGATGATCAATTTCCGAGTGTGAAGTATAAGGTTAAATTGATCGATTTAGACAACTTTACGTACAAGTTGGCGATGATTAAAGAGGAAAATGGCAAGGAACATGAGTCAACTTTGAGTGAAATGAGTGTATTACCGTCTTTTGATGGAGGTTGTACGTTTAGACAGAAGAATATTGATTTTGAAGCAATCTCTGAAGA...

Protein

Download Protein FASTA

139 aa · TkA01G061690|TK1151|PROTEIN

MKFTTVEGDGGVGSIKLMSFLDDQFPSVKYKVKLIDLDNFTYKLAMIKEENGKEHESTLSEMSVLPSFDGGCTFRQKNIDFEAISEDEMKSRKNRLLSILRFLKLSSLKILPNKSLILCIFLIAYSGLFFLLMLLMGKL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G061690`
TK1151 ID	TkA01G061690
OH-1004 ID	LXL04_005360
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	90.600
Protein coverage (%)	TK1151 69.065 / OH-1004 61.935 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA01G061690`
Location	Chr01:15898637-15899517 (+)
Description	Similar to PCKR3: Probable intracellular pathogenesis-related protein T1
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_005360` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006952 defense response Biological Process GO:0009738 abscisic acid-activated signaling pathway Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0004518 nuclease activity Molecular Function GO:0004864 protein phosphatase inhibitor activity Molecular Function GO:0010427 abscisic acid binding Molecular Function GO:0016787 hydrolase activity Molecular Function GO:0038023 signaling receptor activity Molecular Function
KEGG gene cross-reference	dcr:108193625 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.548

Rank 1 · TkA01G061690 · TK1151

Nucleus0.321

Rank 2 · TkA01G061690 · TK1151

Endoplasmic reticulum0.127

Rank 3 · TkA01G061690 · TK1151

Cell membrane0.082

Rank 4 · TkA01G061690 · TK1151

Mitochondrion0.073

Rank 5 · TkA01G061690 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00407Bet_v_14-90 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G061690	`PF00407`	Bet_v_1	4	90	2.2e-05	25.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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