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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G053380
Reference: TK1151 Chr: Chr01 Coordinates: 13813338-13814919 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1007 bp · TkA01G053380|TK1151|cDNA

GAGAGAGAGACAGAGAGATAGAGAGAGAAAATGAGAGAGGATAATCATGATATTCAAACACCAAAGAAGGAACATCTACCAGTTCCTTCCAATCGCAAGGCTAAACAGATGAATGCTCCGTCGAAGAAGCTATATAATCAGCAGCAAAAGAGCGCGAAGAAGAACTTGAGTTCTGTTATGAATTTTATAACTGAGGATGATGTCGTCCCAAACTTACCGGCGAAGGAGCCAATGGAGAGGTTCTCATTGATCTCGGAATC...

CDS

Download CDS FASTA

894 bp · TkA01G053380|TK1151|CDS

ATGAGAGAGGATAATCATGATATTCAAACACCAAAGAAGGAACATCTACCAGTTCCTTCCAATCGCAAGGCTAAACAGATGAATGCTCCGTCGAAGAAGCTATATAATCAGCAGCAAAAGAGCGCGAAGAAGAACTTGAGTTCTGTTATGAATTTTATAACTGAGGATGATGTCGTCCCAAACTTACCGGCGAAGGAGCCAATGGAGAGGTTCTCATTGATCTCGGAATCTGATGACGCTGATCCGACCACCGTAGAGAT...

Protein

Download Protein FASTA

297 aa · TkA01G053380|TK1151|PROTEIN

MREDNHDIQTPKKEHLPVPSNRKAKQMNAPSKKLYNQQQKSAKKNLSSVMNFITEDDVVPNLPAKEPMERFSLISESDDADPTTVEISKPSLTFDQTLVPDKSAALEHPEESVETAPISEAFVFGKDQSNEFIETYIVSLNQFASPTSATPNSLQAITSSSCTSPALSSISTVTMTPFSSPIPSEASPDYASSGDGATKEETDTFKLESLVNHMRQSMFQVLHSADIDPQYKKLLDALVKLVIEESHILHEEKDMVVYLS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G053380
TK1151 IDTkA01G053380
OH-1004 IDLXL04_005416
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)96.600
Protein coverage (%)TK1151 100.000 / OH-1004 37.931
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G053380
LocationChr01:13813338-13814919 (-)
DescriptionSimilar to RCH2: Receptor-like protein kinase 2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_005416 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000105 L-histidine biosynthetic process Biological Process
GO:0009266 response to temperature stimulus Biological Process
GO:0009755 hormone-mediated signaling pathway Biological Process
GO:0010074 maintenance of meristem identity Biological Process
GO:0010078 maintenance of root meristem identity Biological Process
GO:0010082 regulation of root meristem growth Biological Process
GO:0010449 root meristem growth Biological Process
GO:0080092 regulation of pollen tube growth Biological Process
GO:2000280 regulation of root development Biological Process
GO:0005886 plasma membrane Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009536 plastid Cellular Component
KEGG gene cross-reference
ath:AT1G34110
ath:AT3G24240
ath:AT4G26900
ath:AT5G48940
ath:AT5G56040
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.459
Rank 1 · TkA01G053380 · TK1151
Cytoplasm0.415
Rank 2 · TkA01G053380 · TK1151
Endoplasmic reticulum0.096
Rank 3 · TkA01G053380 · TK1151
Cell membrane0.088
Rank 4 · TkA01G053380 · TK1151
Mitochondrion0.073
Rank 5 · TkA01G053380 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

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