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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G049080
Reference: TK1151 Chr: Chr01 Coordinates: 12687038-12688551 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1204 bp · TkA01G049080|TK1151|cDNA

AAAGATTTCATCAAGGGCCACAATGAAATAGGAAGTAGACAACTCGTTTCATTTCTTTATAATACTTTGTTATCCCCTTCTTCAGCGAGGGAAAATCTTCCTCCAAGGGTTTTGCTCGGTAACAAAATGGCGACACTTGAATCACTTCCAATCTCATTCTCCCGTCTCTCATATTCTTCAAATCCGCCATTAATACTCCCCGCAAGATTAAAGTTTTCATGCCCCACTTTTACCCCCAAATTCCTCCACAAATCTCATCC...

CDS

Download CDS FASTA

981 bp · TkA01G049080|TK1151|CDS

AAAGATTTCATCAAGGGCCACAATGAAATAGGAAGTAGACAACTCGTTTCATTTCTTTATAATACTTTGTTATCCCCTTCTTCAGCGAGGGAAAATCTTCCTCCAAGGGTTTTGCTCGGTAACAAAATGGCGACACTTGAATCACTTCCAATCTCATTCTCCCGTCTCTCATATTCTTCAAATCCGCCATTAATACTCCCCGCAAGATTAAAGTTTTCATGCCCCACTTTTACCCCCAAATTCCTCCACAAATCTCATCC...

Protein

Download Protein FASTA

326 aa · TkA01G049080|TK1151|PROTEIN

KDFIKGHNEIGSRQLVSFLYNTLLSPSSARENLPPRVLLGNKMATLESLPISFSRLSYSSNPPLILPARLKFSCPTFTPKFLHKSHPSPLTISRNFQLFSSSSPAIQEVSVEETEKSEEPQKEIVQKRLFVLNLPWTFTVDDLKNLFSECGTIEDAEIIKRKKDGKSRGYAFVTMASTEDALSVIQKYDSHELMGRIIRVEFAKENKKPSSAPPPSIPGEKRYKLYVSNLAWRVRANNLREFFAELNPVSTRVVFESPEG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G049080
TK1151 IDTkA01G049080
OH-1004 IDLXL04_005443
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.300
Protein coverage (%)TK1151 87.117 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G049080
LocationChr01:12687038-12688551 (-)
DescriptionSimilar to 28 kDa ribonucleoprotein, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g52380 Could be involved in splicing and/or processing of chloroplast RNAs. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_005443 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0009451 RNA modification Biological Process
GO:0031425 chloroplast RNA processing Biological Process
GO:0045087 innate immune response Biological Process
GO:1901259 chloroplast rRNA processing Biological Process
GO:0005829 cytosol Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009535 chloroplast thylakoid membrane Cellular Component
GO:0009570 chloroplast stroma Cellular Component
GO:0009579 thylakoid Cellular Component
GO:1990904 ribonucleoprotein complex Cellular Component
GO:0003723 RNA binding Molecular Function
KEGG gene cross-reference
ath:AT3G52380
nsy:104227036
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.944
Rank 1 · TkA01G049080 · TK1151
Mitochondrion0.051
Rank 2 · TkA01G049080 · TK1151
Nucleus0.048
Rank 3 · TkA01G049080 · TK1151
Cytoplasm0.023
Rank 4 · TkA01G049080 · TK1151
Cell membrane0.011
Rank 5 · TkA01G049080 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF17232Pep1_798-133 aa
PF22976RRM_10127-186 aa
PF30126YHR127W_C127-202 aa
PF28976RRM_ACIN1128-186 aa
PF16302DUF4944128-203 aa
PF00076RRM_1129-198 aa
PF13893RRM_5130-207 aa
PF26250RRM_RdRP1_2131-182 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G049080PF17232Pep1_7981330.3911.9
TkA01G049080PF22976RRM_101271865.4e-0524.0
TkA01G049080PF30126YHR127W_C1272020.01915.6
TkA01G049080PF28976RRM_ACIN11281860.007317.1
TkA01G049080PF16302DUF49441282030.02115.6
TkA01G049080PF00076RRM_11291983.4e-38130.1
TkA01G049080PF13893RRM_51302071.4e-0835.2
TkA01G049080PF26250RRM_RdRP1_21311820.0006420.8
TkA01G049080PF28442DUF84001332000.07813.9
TkA01G049080PF28441RRM_111342003.3e-0937.7
TkA01G049080PF14703PHM7_cyt1581860.01316.5
TkA01G049080PF29326RRM_MUD2_C1672060.005417.5
TkA01G049080PF29396F07F6_N1752060.04414.2
TkA01G049080PF00076RRM_12252943.4e-38130.1
TkA01G049080PF30126YHR127W_C2252960.01915.6
TkA01G049080PF26250RRM_RdRP1_22262900.0006420.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q39061Arabidopsis thalianasp|Q39061|CP33_ARATH RNA-binding protein CP33, chloroplastic31.500%Swiss-ProtMedium

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