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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G042440
Reference: TK1151 Chr: Chr01 Coordinates: 10895919-10905975 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

8067 bp · TkA01G042440|TK1151|cDNA

ATGTTTAAACAACGCAAATTCCGGGGAGAGAGTAAGTCCGTTCCAAATCCAATTCATGGATTCGCCGAGTCCGACGAACACATGTCCAAATCCTCAGACTCGTCCGAACCCGCAGAAAGAATCTTTGAAATTGACCCCAAGGATCAGGAGGTTATCGATGAAATTCTACAAGAGCCTGCGTCAATACCTGGTATTTGCAAAGTTAACCCTGATTGGAATTTGGGCTCGGAATCCAGTTCAAGTGCTGGAGAAAACCTGTC...

CDS

Download CDS FASTA

8067 bp · TkA01G042440|TK1151|CDS

ATGTTTAAACAACGCAAATTCCGGGGAGAGAGTAAGTCCGTTCCAAATCCAATTCATGGATTCGCCGAGTCCGACGAACACATGTCCAAATCCTCAGACTCGTCCGAACCCGCAGAAAGAATCTTTGAAATTGACCCCAAGGATCAGGAGGTTATCGATGAAATTCTACAAGAGCCTGCGTCAATACCTGGTATTTGCAAAGTTAACCCTGATTGGAATTTGGGCTCGGAATCCAGTTCAAGTGCTGGAGAAAACCTGTC...

Protein

Download Protein FASTA

2688 aa · TkA01G042440|TK1151|PROTEIN

MFKQRKFRGESKSVPNPIHGFAESDEHMSKSSDSSEPAERIFEIDPKDQEVIDEILQEPASIPGICKVNPDWNLGSESSSSAGENLSSKKTSSSHEACPSKDSVTKEEFNMLNGKVDQILGLLQPPTKFPCFEDREKQLESLISTRLQESVSQVEKTYSAFEANCLLKVNECLHEATANTKVFQQTIDDLHRRHEKRMSRLEDEIKEKDKQLMIQNEVLVRTLNTLSDLSDVLQLGRLTSAIEDAIQSILQKPTTADCLL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G042440
TK1151 IDTkA01G042440
OH-1004 IDLXL04_008398
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)95.400
Protein coverage (%)TK1151 100.000 / OH-1004 79.834
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G042440
LocationChr01:10895919-10905975 (+)
DescriptionSimilar to pif1: ATP-dependent DNA helicase PIF1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_008398 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000723 telomere maintenance Biological Process
GO:0000724 double-strand break repair via homologous recombination Biological Process
GO:0001117 protein-DNA-RNA complex disassembly Biological Process
GO:0006260 DNA replication Biological Process
GO:0006281 DNA repair Biological Process
GO:0006289 nucleotide-excision repair Biological Process
GO:0006310 DNA recombination Biological Process
GO:0007004 telomere maintenance via telomerase Biological Process
GO:0010224 response to UV-B Biological Process
GO:0032211 negative regulation of telomere maintenance via telomerase Biological Process
GO:0051321 meiotic cell cycle Biological Process
GO:0000781 chromosome, telomeric region Cellular Component
KEGG gene cross-reference
ath:AT5G08020
cje:Cj0945c
mmu:208084
rno:367645
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.910
Rank 1 · TkA01G042440 · TK1151
Cytoplasm0.177
Rank 2 · TkA01G042440 · TK1151
Mitochondrion0.035
Rank 3 · TkA01G042440 · TK1151
Cell membrane0.016
Rank 4 · TkA01G042440 · TK1151
Endoplasmic reticulum0.008
Rank 5 · TkA01G042440 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13191AAA_16141-200 aa
PF10923BrxC_BrxD145-234 aa
PF10436BCDHK_Adom3148-217 aa
PF20870FAM186A-B_N166-237 aa
PF04851ResIII180-227 aa
PF14214Helitron_like_N181-226 aa
PF20870FAM186A-B_N251-288 aa
PF10436BCDHK_Adom3640-661 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G042440PF13191AAA_161412000.05214.8
TkA01G042440PF10923BrxC_BrxD1452340.2710.8
TkA01G042440PF10436BCDHK_Adom31482170.1412.7
TkA01G042440PF20870FAM186A-B_N1662376.56.8
TkA01G042440PF04851ResIII1802270.7210.5
TkA01G042440PF14214Helitron_like_N1812267.5e-59199.8
TkA01G042440PF20870FAM186A-B_N2512886.56.8
TkA01G042440PF10436BCDHK_Adom36406610.1412.7
TkA01G042440PF26475DUF8148_C7427780.4610.4
TkA01G042440PF10923BrxC_BrxD109011070.2710.8
TkA01G042440PF14214Helitron_like_N122514097.5e-59199.8
TkA01G042440PF23343REP_ORF2-G2P136214180.0003521.5
TkA01G042440PF26475DUF8148_C139114250.4610.4
TkA01G042440PF20199RepSA139414340.05113.5
TkA01G042440PF23343REP_ORF2-G2P152315490.0003521.5
TkA01G042440PF05970PIF1187720991.7e-82277.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

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