TkA01G038610 | RubberDandelionOmics

Gene overview

TkA01G038610

Reference: TK1151 Chr: Chr01 Coordinates: 9974532-9976286 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

588 bp · TkA01G038610|TK1151|cDNA

CCCACTTATTCCCTAAATCCAAATTTCCGGCGCTTTCTTCCTTCTCCAACCCTAACCCTTCTGATTTTAAGCTCGATGATGATTTGGTTTTGTTGTATAAGGTCTATGAATCCTTGTAGGTTCTTTAAGGAATCCAGTGAGGAGGAAAGGGAACAATTGCGCTTGTTACGGTCCTCCCGCTGCGGGTGGTGTTGGCGACGACGGTGGTTGTGCTGTATTACTTGATCTGTAGGATTTGTACTCTGTTTATGGCACCAAAT...

CDS

Download CDS FASTA

444 bp · TkA01G038610|TK1151|CDS

ATGGCACCAAATCGGGAAGACGAACAGGAGGATTACGCTCACTTGGGTGGGTGGAGAAGAACGGTTCTCTATTGGTCTGGAAGGGTTCTTTCTAGGCTTATGCTTTTCGCATTCGGATTTTATTGGATTAACGAGACTTGCAGCAATCCAAAAATCAACGGAAATATCGACAATGAGGTGGATTTGAAGGAGCAATCTGAGGAAGAAGATGAACGACCTGGAGTTATTATATCAAACCATATTTCACATATGGATATTTT...

Protein

Download Protein FASTA

147 aa · TkA01G038610|TK1151|PROTEIN

MAPNREDEQEDYAHLGGWRRTVLYWSGRVLSRLMLFAFGFYWINETCSNPKINGNIDNEVDLKEQSEEEDERPGVIISNHISHMDILYHMSSSFPTFVAKRSVCKLPLVGLISKCIGCVYVQRESKSSNTKGVSGTPCDFTVMSICK

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G038610`
TK1151 ID	TkA01G038610
OH-1004 ID	LXL04_031606
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	96.300
Protein coverage (%)	TK1151 91.156 / OH-1004 33.753 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G038610

Location Chr01:9974532-9976286 (+)

Description Similar to LPEAT1: Lysophospholipid acyltransferase LPEAT1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g80950`	Possesses acyl-CoA-dependent lysophospholipid acyltransferase activity with a subset of lysophospholipids as substrates.	Characterization of two Arabidopsis thaliana acyltransferases with preference for lysophosphatidylethanolamine.2009 · DOI: 10.1186/1471-2229-9-60 Acyl-CoA:Lysophosphatidylethanolamine Acyltransferase Activity Regulates Growth of Arabidopsis.2017 · DOI: 10.1104/pp.17.00391

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031606 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000038 very long-chain fatty acid metabolic process Biological Process

GO:0006644 phospholipid metabolic process Biological Process

GO:0006654 phosphatidic acid biosynthetic process Biological Process

GO:0008654 phospholipid biosynthetic process Biological Process

GO:0036148 phosphatidylglycerol acyl-chain remodeling Biological Process

GO:0036151 phosphatidylcholine acyl-chain remodeling Biological Process

GO:0043129 surfactant homeostasis Biological Process

GO:0045732 positive regulation of protein catabolic process Biological Process

GO:2001246 negative regulation of phosphatidylcholine biosynthetic process Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

KEGG gene cross-reference

ath:AT1G80950

ath:AT2G45670

hsa:79888

mmu:210992

rno:361467

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.581

Rank 1 · TkA01G038610 · TK1151

Golgi apparatus0.192

Rank 2 · TkA01G038610 · TK1151

Nucleus0.105

Rank 3 · TkA01G038610 · TK1151

Cytoplasm0.095

Rank 4 · TkA01G038610 · TK1151

Cell membrane0.085

Rank 5 · TkA01G038610 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01553Acyltransferase65-131 aa

PF14979TMEM52106-145 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G038610	`PF01553`	Acyltransferase	65	131	1.5e-10	41.7
TkA01G038610	`PF14979`	TMEM52	106	145	0.24	12.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8L7R3`	Arabidopsis thaliana	sp\|Q8L7R3\|LPCT1_ARATH Lysophospholipid acyltransferase LPEAT1	65.000%	Swiss-Prot	High

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