TkA01G036150 | RubberDandelionOmics

Gene overview

TkA01G036150

Reference: TK1151 Chr: Chr01 Coordinates: 9368068-9372024 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2758 bp · TkA01G036150|TK1151|cDNA

TTTATATCTGTGCATTGACCCCCAAGCCGTTGTAGAAAGAGAGAACATATAGATGCCATATCTTTTACGCATATATGTAAAATGATGAACAACAAACCATGAAAGTCATCATCATCAATAGGAGCTAGAGGATTATCTCTTCACATATATACCCAAGCTACCCTTTTCCTATGTCTGGTTTTCACGGCACCTCCATTTTTGACAATTTATGTTCCATTTCCTCCACCATCGCCACCGTCCGCCGCCACAACCACCATTTC...

CDS

Download CDS FASTA

1953 bp · TkA01G036150|TK1151|CDS

ATGGCTGAAGAAGAGAAGATCATTAGAGAGAGTAATACTATGGTAGTTGACAATTCTACAGATAATTACAATTGTTACTCGGATGACGATGATCATCATCATCATCATGTGAATTCATCAAATAACCGTAATGCTACAAATACCTTCGATACAAGCCCTTTAGAGATCTTCAACTACGAGTCACACAACTCAGTGAGTCACAACTCAGGGATGTTCTGGAAAGACCCGTCTTCTCCACCTTCTTCCAAACCCATAACCGA...

Protein

Download Protein FASTA

650 aa · TkA01G036150|TK1151|PROTEIN

MAEEEKIIRESNTMVVDNSTDNYNCYSDDDDHHHHHVNSSNNRNATNTFDTSPLEIFNYESHNSVSHNSGMFWKDPSSPPSSKPITDSDFYNFDESSLQRCVFPCKPNERPSQGLSLSLSSAHPPTIGIQQFELVRSQEHQYEHHDHHHQGYFGKSMSMDHEQHHQDMMSTQDGFLGKPGNIISGSGGDGDVDGGGGGGGGHYNHYQSGQYNIRNSRYLVPVQELLNEFCNLGSKKSDYLPKAKGVDVTSNQWQDHDNTN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G036150`
TK1151 ID	TkA01G036150
OH-1004 ID	LXL04_005540
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.800
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G036150

Location Chr01:9368068-9372024 (+)

Description Similar to BEL1: Homeobox protein BEL1 homolog

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g41410`	Plays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors.	Homeotic Transformation of Ovules into Carpel-like Structures in Arabidopsis.1994 · DOI: 10.1105/tpc.6.3.333 Genetic and molecular interactions between BELL1 and MADS box factors support ovule development in Arabidopsis.2007 · DOI: 10.1105/tpc.107.051797 The transcription factors BEL1 and SPL are required for cytokinin and auxin signaling during ovule development in Arabidopsis.2012 · DOI: 10.1105/tpc.112.100164
`At4g36870`	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf.	No verified direct reference in this release
`At2g23760`	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf.	The Arabidopsis BEL1-LIKE HOMEODOMAIN proteins SAW1 and SAW2 act redundantly to regulate KNOX expression spatially in leaf margins.2007 · DOI: 10.1105/tpc.106.048769
`At1g75410`	Transcription factor involved in the nuclear import of SHOOT MERISTEMLESS (STM).	No verified direct reference in this release
`At2g16400`	BEL1-like homeodomain protein 7.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_005540 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006357 regulation of transcription by RNA polymerase II Biological Process

GO:0009965 leaf morphogenesis Biological Process

GO:0048363 mucilage pectin metabolic process Biological Process

GO:0048481 plant ovule development Biological Process

GO:0048510 regulation of timing of transition from vegetative to reproductive phase Biological Process

GO:0005634 nucleus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

KEGG gene cross-reference

ath:AT1G75410

ath:AT2G23760

ath:AT4G34610

ath:AT4G36870

ath:AT5G41410

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.968

Rank 1 · TkA01G036150 · TK1151

Cytoplasm0.090

Rank 2 · TkA01G036150 · TK1151

Cell membrane0.035

Rank 3 · TkA01G036150 · TK1151

Endoplasmic reticulum0.024

Rank 4 · TkA01G036150 · TK1151

Plastid0.013

Rank 5 · TkA01G036150 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07526POX213-341 aa

PF05920Homeobox_KN411-450 aa

PF00046Homeodomain418-450 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G036150	`PF07526`	POX	213	341	1.1e-48	165.9
TkA01G036150	`PF05920`	Homeobox_KN	411	450	1.4e-18	67.2
TkA01G036150	`PF00046`	Homeodomain	418	450	3.1e-06	27.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q38897`	Arabidopsis thaliana	sp\|Q38897\|BEL1_ARATH Homeobox protein BEL1 homolog	48.100%	Swiss-Prot	Medium
`Q9SW80`	Arabidopsis thaliana	sp\|Q9SW80\|BLH2_ARATH BEL1-like homeodomain protein 2	57.800%	Swiss-Prot	Low
`Q94KL5`	Arabidopsis thaliana	sp\|Q94KL5\|BLH4_ARATH BEL1-like homeodomain protein 4	56.700%	Swiss-Prot	Low
`Q9FWS9`	Arabidopsis thaliana	sp\|Q9FWS9\|BLH3_ARATH BEL1-like homeodomain protein 3	46.400%	Swiss-Prot	Low
`Q9SIW1`	Arabidopsis thaliana	sp\|Q9SIW1\|BLH7_ARATH BEL1-like homeodomain protein 7	53.800%	Swiss-Prot	Low

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