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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G035230
Reference: TK1151 Chr: Chr01 Coordinates: 9162916-9164482 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

907 bp · TkA01G035230|TK1151|cDNA

AAAGAGGCCAAGATTTTAAATTAGTCTCCTCTCATCTTTCATAGAGAGAATTTTTGGGAGAAAGACATTGGAATAATGTTCTAAAGTCACGGTTATCTCAGTCCAGGTATCGTTTTATTCATCATTCCCGAAAAATTAAAGCGACTTAAAGATTTCAGTCACAATCAAGACTTCTTCTTCTTTCCATGTCAATGTCTTCTGAAATCTATGAATTTGATGGATGTCTTTTCAATGATCCATTTTCAACCATTGACATCCTC...

CDS

Download CDS FASTA

534 bp · TkA01G035230|TK1151|CDS

ATGTCAATGTCTTCTGAAATCTATGAATTTGATGGATGTCTTTTCAATGATCCATTTTCAACCATTGACATCCTCCAAACTTTCCAAGAACACAATTACAACTACACCCCTTTACTACCATCGCCACCCTTGACCTTCAACCAAGAAAATCTTGACACCCCATTTGAAGAAATTGACCCAATTACCCCCACCATCATCCTCTCTTCCTCCCCACCATCCCACCAGCTTCAAAACCTCTCGCTTTATAACCAAATGGGTAT...

Protein

Download Protein FASTA

177 aa · TkA01G035230|TK1151|PROTEIN

MSMSSEIYEFDGCLFNDPFSTIDILQTFQEHNYNYTPLLPSPPLTFNQENLDTPFEEIDPITPTIILSSSPPSHQLQNLSLYNQMGISVTSSNDVLDSCNLEVKTEESQLPLCDNYYYGGSDHAFKMMQRSYSSNSFQSQEKSNGVLYQPKFNGLIESANLHSQSLPHLITAFPLPI

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G035230
TK1151 IDTkA01G035230
OH-1004 IDLXL04_005548
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)100.000
Protein coverage (%)TK1151 92.655 / OH-1004 50.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G035230
LocationChr01:9162916-9164482 (-)
DescriptionSimilar to COL4: Zinc finger protein CONSTANS-LIKE 4
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_005548 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0009658 chloroplast organization Biological Process
GO:0009908 flower development Biological Process
GO:0009909 regulation of flower development Biological Process
GO:0010099 regulation of photomorphogenesis Biological Process
GO:0010161 red light signaling pathway Biological Process
GO:0032922 circadian regulation of gene expression Biological Process
GO:0048577 negative regulation of short-day photoperiodism, flowering Biological Process
GO:2000028 regulation of photoperiodism, flowering Biological Process
GO:0005634 nucleus Cellular Component
GO:0016607 nuclear speck Cellular Component
KEGG gene cross-reference
ath:AT2G24790
ath:AT3G02380
ath:AT5G24930
ath:AT5G57660
dosa:Os09g0240200
osa:4346474
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.915
Rank 1 · TkA01G035230 · TK1151
Cytoplasm0.240
Rank 2 · TkA01G035230 · TK1151
Cell membrane0.025
Rank 3 · TkA01G035230 · TK1151
Endoplasmic reticulum0.021
Rank 4 · TkA01G035230 · TK1151
Lysosome / Vacuole0.013
Rank 5 · TkA01G035230 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

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