RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G034330
Reference: TK1151 Chr: Chr01 Coordinates: 8942891-8945453 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1217 bp · TkA01G034330|TK1151|cDNA

GGAATACCTTTGCGCACTTTCTCTCTCTTCCTCTCTCTCTTCCTCTACCTTTGCTCAACTCCAAGTACACGGCTGACCGCTCCATTCAGTTTCCCCACAACTCCACCTCAATCGATTGAGGTACGAACGCCTTCTTCCATTTGAGAGGTGTCTTCTCCTTCACTAAAGAACAAAGCACAATGAGACCATTATCAATACCTTCAATCAGATAAAACACATCACCGAGTTCAAAAACAAAATGGGAGGCTGCTGTTGCTGCT...

CDS

Download CDS FASTA

468 bp · TkA01G034330|TK1151|CDS

ATGGGAGGCTGCTGTTGCTGCTTTTCCAAAGGAGTAGAACTCAACTCTTCACCCCGATTCTACCATTATCCAATAGCATCAGAGGAACGCCAACCTTTATCATCAAACAGTGGTGCAGTATCTGCACTTTCCACAGGTCTTTTAGTTGACACAAATCTTGAAACATCAATACCAGACACATACAGGCCTCCACCTACCCCTATCCCATATGATGTAAATGTAAATGTTGACCATCCAAGAAGTCCACTCAACAACCGAGA...

Protein

Download Protein FASTA

155 aa · TkA01G034330|TK1151|PROTEIN

MGGCCCCFSKGVELNSSPRFYHYPIASEERQPLSSNSGAVSALSTGLLVDTNLETSIPDTYRPPPTPIPYDVNVNVDHPRSPLNNREASVGVDEITISNSVSGETVIKEVKGPDCKDITDIELVATKEVDDEIDKSGELKKPSGPILPPEECPTC

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA01G034330
TK1151 IDTkA01G034330
OH-1004 IDLXL04_005556
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 75.980
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G034330
LocationChr01:8942891-8945453 (-)
DescriptionSimilar to RHB1A: Probable E3 ubiquitin-protein ligase RHB1A
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_005556 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009414 response to water deprivation Biological Process
GO:0009561 megagametogenesis Biological Process
GO:0009737 response to abscisic acid Biological Process
GO:0009789 positive regulation of abscisic acid-activated signaling pathway Biological Process
GO:0010498 proteasomal protein catabolic process Biological Process
GO:0010729 positive regulation of hydrogen peroxide biosynthetic process Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0051603 proteolysis involved in protein catabolic process Biological Process
GO:0051726 regulation of cell cycle Biological Process
GO:0055046 microgametogenesis Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
KEGG gene cross-reference
ath:AT3G02290
ath:AT4G00335
ath:AT4G14220
ath:AT4G23450
ath:AT5G22000
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.374
Rank 1 · TkA01G034330 · TK1151
Cell membrane0.298
Rank 2 · TkA01G034330 · TK1151
Nucleus0.256
Rank 3 · TkA01G034330 · TK1151
Golgi apparatus0.122
Rank 4 · TkA01G034330 · TK1151
Endoplasmic reticulum0.116
Rank 5 · TkA01G034330 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

View in Genome Browser