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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G032380
Reference: TK1151 Chr: Chr01 Coordinates: 8383666-8387009 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1193 bp · TkA01G032380|TK1151|cDNA

AAGCGGATGAAAGTTGGGGGCATATTCCGGCAATCCATCGCTTCCGTGTATAGAGCGAAAAGAGGGGGAGAGAGAGAGAGAGAAATACAGCTATCGAAAGTGAGATGTGGGAATCGATCTTCCTTACGGTAGCAGCCACCGCCGGCAACAACATCGGAAAAGTTCTTCAGAAGAAAGGAACTGTCATTCTCCCCCCTCTCTCTCTTAAACTCAAGGTGGTAAGAGCATATGCTTCTAATAAACCATGGCTGATAGGATTT...

CDS

Download CDS FASTA

1089 bp · TkA01G032380|TK1151|CDS

ATGTGGGAATCGATCTTCCTTACGGTAGCAGCCACCGCCGGCAACAACATCGGAAAAGTTCTTCAGAAGAAAGGAACTGTCATTCTCCCCCCTCTCTCTCTTAAACTCAAGGTGGTAAGAGCATATGCTTCTAATAAACCATGGCTGATAGGATTTATGATGGATATCTTTGGGGCATTACTGATGTTACGTGCATTATCTCTAGCTCCTGTCTCAGTGATTCAACCAGTTTCTGGATGTGGTCTTGCTATCCTATCTGT...

Protein

Download Protein FASTA

362 aa · TkA01G032380|TK1151|PROTEIN

MWESIFLTVAATAGNNIGKVLQKKGTVILPPLSLKLKVVRAYASNKPWLIGFMMDIFGALLMLRALSLAPVSVIQPVSGCGLAILSVFSHFYLKEVMNAVDWLGITLAGLGTIGVGAGGEEQKASSISILHLPWVACGVAFLFVLLNGWLRIYRRQRREQELMQSEVVEEIIYGLESGILFGIASVISKMGFVFLEQGFSALLVPICISISICCSASGFVYQTRGLKHGRAVVVSTCAAVASIVTGVLAGMLALGERLPE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G032380
TK1151 IDTkA01G032380
OH-1004 IDLXL04_005581
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)90.400
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G032380
LocationChr01:8383666-8387009 (-)
DescriptionSimilar to At5g11960: Probable magnesium transporter NIPA9
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g11960 Acts as a Mg(2+) transporter. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_005581 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0015693 magnesium ion transport Biological Process
GO:0005769 early endosome Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0016020 membrane Cellular Component
GO:0015095 magnesium ion transmembrane transporter activity Molecular Function
KEGG gene cross-reference
ath:AT5G11960
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.302
Rank 1 · TkA01G032380 · TK1151
Lysosome / Vacuole0.275
Rank 2 · TkA01G032380 · TK1151
Endoplasmic reticulum0.212
Rank 3 · TkA01G032380 · TK1151
Cell membrane0.194
Rank 4 · TkA01G032380 · TK1151
Cytoplasm0.182
Rank 5 · TkA01G032380 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00893Multi_Drug_Res35-107 aa
PF10639TMEM23439-112 aa
PF05653Mg_trans_NIPA40-128 aa
PF00892EamA41-115 aa
PF31049MiaB_C59-85 aa
PF19094EMC6_arch89-105 aa
PF00892EamA126-154 aa
PF31049MiaB_C132-159 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G032380PF00893Multi_Drug_Res351073.88.8
TkA01G032380PF10639TMEM234391120.01216.3
TkA01G032380PF05653Mg_trans_NIPA401282.1e-0627.9
TkA01G032380PF00892EamA411151.2e-0629.5
TkA01G032380PF31049MiaB_C59854.47.6
TkA01G032380PF19094EMC6_arch891050.6211.2
TkA01G032380PF00892EamA1261541.2e-0629.5
TkA01G032380PF31049MiaB_C1321594.47.6
TkA01G032380PF19094EMC6_arch1771900.6211.2
TkA01G032380PF00893Multi_Drug_Res1802563.88.8
TkA01G032380PF00892EamA1832581.2e-0629.5
TkA01G032380PF10639TMEM2342152710.01216.3
TkA01G032380PF19094EMC6_arch2282750.6211.2
TkA01G032380PF31049MiaB_C2292644.47.6
TkA01G032380PF05653Mg_trans_NIPA2312472.1e-0627.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8RWH8Arabidopsis thalianasp|Q8RWH8|NIPA9_ARATH Probable magnesium transporter NIPA980.000%Swiss-ProtHigh

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