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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G032130
Reference: TK1151 Chr: Chr01 Coordinates: 8321941-8326266 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3610 bp · TkA01G032130|TK1151|cDNA

CTCAAACTTACATCCCTCTCGCAGTCTCTCTATATATACACAGATCATTTAATTCAGGAACTCAAACCACATACATCCTATCTCAAAAAAAATCAACACACTAATGGCATCATCATCATCTTCTTTTTCTGCTCCAGTATTTTCTTCTCAGTCATGGAAATATGATGTTTTCCTAAGTTTTAGAGGAAGTGATACTCGCAAGACTTTTGTTGATCATCTCTACAAAGCTCTTGATCAGAATGGGATCCATACTTACAAGG...

CDS

Download CDS FASTA

3309 bp · TkA01G032130|TK1151|CDS

ATGGCATCATCATCATCTTCTTTTTCTGCTCCAGTATTTTCTTCTCAGTCATGGAAATATGATGTTTTCCTAAGTTTTAGAGGAAGTGATACTCGCAAGACTTTTGTTGATCATCTCTACAAAGCTCTTGATCAGAATGGGATCCATACTTACAAGGATGATGTAACACTTCGTCGGGGAGAATCGATCAGCCCATCTCTTTTGAAGGCAATTGAAGAATCGCAGATCGCAGTCATCATATTCTCTAAAAACTATGCAAA...

Protein

Download Protein FASTA

1102 aa · TkA01G032130|TK1151|PROTEIN

MASSSSSFSAPVFSSQSWKYDVFLSFRGSDTRKTFVDHLYKALDQNGIHTYKDDVTLRRGESISPSLLKAIEESQIAVIIFSKNYANSTWCLDELTHIMECRDKRKQVVMPIFYDVEPWEVRKQKRTYKEAFDKYELESKKKIKSRGQAIMNDPWGWLYAPLERNRKYKEATVTQELENKAKVESWRKALEEASNISGWETKHIFNGHESQSIKQIVDEISQRLKLVTSEGNEKVIGIRTRMQALRSKLQNEASNVCMIG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G032130
TK1151 IDTkA01G032130
OH-1004 IDLXL04_005587
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)98.300
Protein coverage (%)TK1151 93.466 / OH-1004 56.041
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G032130
LocationChr01:8321941-8326266 (+)
DescriptionSimilar to ROQ1: Disease resistance protein Roq1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g12010 TIR-NB-LRR receptor-like protein involved in plant defense.
Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles.2017 · DOI: 10.1016/j.chom.2017.03.005
At4g16950 TIR-NB-LRR receptor-like protein that confers resistance to the pathogen Hyaloperonospora arabidopsis isolate Noco2 (downy mildew disease). No verified direct reference in this release
At1g63880 TIR-NB-LRR receptor-like protein that confers resistance to the pathogen Leptosphaeria maculans (blackleg disease).
Transgressive segregation reveals two Arabidopsis TIR-NB-LRR resistance genes effective against Leptosphaeria maculans, causal agent of blackleg disease.2006 · DOI: 10.1111/j.1365-313x.2006.02688.x

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_005587 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006952 defense response Biological Process
GO:0007165 signal transduction Biological Process
GO:0019677 NAD+ catabolic process Biological Process
GO:0043068 positive regulation of programmed cell death Biological Process
GO:0050832 defense response to fungus Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0003953 NAD+ nucleosidase activity Molecular Function
GO:0043531 ADP binding Molecular Function
GO:0050135 NADP+ nucleosidase activity Molecular Function
GO:0061809 NAD+ nucleosidase activity, cyclic ADP-ribose generating Molecular Function
KEGG gene cross-referenceNo functional description available
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.372
Rank 1 · TkA01G032130 · TK1151
Nucleus0.324
Rank 2 · TkA01G032130 · TK1151
Cell membrane0.312
Rank 3 · TkA01G032130 · TK1151
Endoplasmic reticulum0.093
Rank 4 · TkA01G032130 · TK1151
Plastid0.056
Rank 5 · TkA01G032130 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01582TIR19-142 aa
PF26659PH_DUOX19-50 aa
PF13676TIR_222-132 aa
PF25019LRR_R13L1-DRL21133-185 aa
PF01582TIR174-232 aa
PF00931NB-ARC240-407 aa
PF01637ATPase_2243-433 aa
PF24883NPHP3_N254-320 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G032130PF01582TIR191421.9e-49168.6
TkA01G032130PF26659PH_DUOX19500.1412.5
TkA01G032130PF13676TIR_2221322.5e-1764.2
TkA01G032130PF25019LRR_R13L1-DRL211331850.02715.1
TkA01G032130PF01582TIR1742321.9e-49168.6
TkA01G032130PF00931NB-ARC2404078.7e-2175.0
TkA01G032130PF01637ATPase_22434330.001319.3
TkA01G032130PF24883NPHP3_N2543200.01716.0
TkA01G032130PF13238AAA_182593510.2112.8
TkA01G032130PF13401AAA_222603700.009117.0
TkA01G032130PF05729NACHT2614043.1e-0627.8
TkA01G032130PF25019LRR_R13L1-DRL213423430.02715.1
TkA01G032130PF01582TIR4104541.9e-49168.6
TkA01G032130PF13855LRR_84644830.001618.9
TkA01G032130PF23282WHD_ROQ14785451.8e-1764.0
TkA01G032130PF13238AAA_185325670.2112.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SZ66Arabidopsis thalianasp|Q9SZ66|DSC1_ARATH Disease resistance-like protein DSC133.700%Swiss-ProtMedium
F4JNB7Arabidopsis thalianasp|F4JNB7|RPP5_ARATH Disease resistance protein RPP530.000%Swiss-ProtMedium
Q9CAK1Arabidopsis thalianasp|Q9CAK1|RLM1B_ARATH Disease resistance protein RML1B27.300%Swiss-ProtLow

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