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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G031810
Reference: TK1151 Chr: Chr01 Coordinates: 8221525-8227562 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2618 bp · TkA01G031810|TK1151|cDNA

GTGTTCAGCAGCCTACGAACCCTTTTCAACGAACAATTGGATTACGATTTCCTGAAACAACATAAAAATCCAATCTTTTGTTTCCCCTTCAAGACATCTCTCCCCCATCTCCCGTAAACCCACCAATTTCTCGCTTAAAGCTCGCAGCCCTTCGAATCAAGCATCTATTTGGTCATTTCTATTCGAGGAAGAAAGGGCGAGACAAAGATCTGACCTTCGATTTAAAAGCGAAGGAGAAAGATGGGCCTAAAACGCCTTCT...

CDS

Download CDS FASTA

2103 bp · TkA01G031810|TK1151|CDS

ATGGGCCTAAAACGCCTTCTTACCCAGGTCTCAAGGCCACAATCACAAGTCAAGCTTCTAAAAAGCTTGTATACCAGATCATACAATACTTCTCAAAACATTGCATCTGATGCAGTTTACAAGGTGCCAGGTGGACAAAGAAGGTTTCAGTCAAGCTATGGGGGTGGTTTTGCACGAAGAATGCGTGAACGCGATGCAGATAGAGCAAATGAGGCATCATTTAGGGAAGTTTACAGAAATGACCCTGAAGCTGTCATAAG...

Protein

Download Protein FASTA

700 aa · TkA01G031810|TK1151|PROTEIN

MGLKRLLTQVSRPQSQVKLLKSLYTRSYNTSQNIASDAVYKVPGGQRRFQSSYGGGFARRMRERDADRANEASFREVYRNDPEAVIRQFESQPYLHSNPSALKEYVKALVKVDRLDESELLKTVQRGMTGSSGKSAYDEEMIGSGYSALKNVGKSTKEGLLGTAAAPIHMVATEGGHLKEQIWRTVRALGMTFLLMSGVGALIEDRGITKGLGLHDEVQPSMESSTKFSDVKGVDEAKAELEEIVYYLRDPKRFTRLGGK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G031810
TK1151 IDTkA01G031810
OH-1004 IDLXL04_005592
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.700
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G031810
LocationChr01:8221525-8227562 (+)
DescriptionSimilar to FTSH4: ATP-dependent zinc metalloprotease FTSH 4, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g26140 Probable ATP-dependent zinc metallopeptidase. No verified direct reference in this release
At5g53170 Probable ATP-dependent zinc metallopeptidase.
FtsH11 protease plays a critical role in Arabidopsis thermotolerance.2006 · DOI: 10.1111/j.1365-313x.2006.02855.x

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0574500 Probable ATP-dependent zinc metallopeptidase. No verified direct reference in this release
Os01g0574400 Probable ATP-dependent zinc metallopeptidase. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_005592 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006457 protein folding Biological Process
GO:0006508 proteolysis Biological Process
GO:0006515 protein quality control for misfolded or incompletely synthesized proteins Biological Process
GO:0007005 mitochondrion organization Biological Process
GO:0009408 response to heat Biological Process
GO:0010073 meristem maintenance Biological Process
GO:0010304 PSII associated light-harvesting complex II catabolic process Biological Process
GO:0030150 protein import into mitochondrial matrix Biological Process
GO:0030163 protein catabolic process Biological Process
GO:0033619 membrane protein proteolysis Biological Process
GO:0045037 protein import into chloroplast stroma Biological Process
GO:0045041 protein import into mitochondrial intermembrane space Biological Process
KEGG gene cross-reference
ath:AT2G26140
ath:AT5G53170
dosa:Os01g0574400
dosa:Os01g0574500
sce:YPR024W
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.932
Rank 1 · TkA01G031810 · TK1151
Cytoplasm0.072
Rank 2 · TkA01G031810 · TK1151
Nucleus0.058
Rank 3 · TkA01G031810 · TK1151
Plastid0.030
Rank 4 · TkA01G031810 · TK1151
Cell membrane0.029
Rank 5 · TkA01G031810 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF06068TIP49210-298 aa
PF24389ORC-CDC6-like242-282 aa
PF13481AAA_25257-281 aa
PF02367TsaE259-288 aa
PF06414Zeta_toxin260-285 aa
PF13191AAA_16261-286 aa
PF12775AAA_7263-330 aa
PF00158Sigma54_activat263-283 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G031810PF06068TIP492102986.3e-0626.3
TkA01G031810PF24389ORC-CDC6-like2422820.01315.0
TkA01G031810PF13481AAA_252572810.001718.7
TkA01G031810PF02367TsaE2592880.2112.3
TkA01G031810PF06414Zeta_toxin2602850.1112.7
TkA01G031810PF13191AAA_162612862.9e-0525.3
TkA01G031810PF12775AAA_72633300.02314.9
TkA01G031810PF00158Sigma54_activat2632830.1312.7
TkA01G031810PF07728AAA_52643751.3e-0629.2
TkA01G031810PF05496RuvB_N2643333.3e-0524.4
TkA01G031810PF01695IstB_IS212642860.0215.2
TkA01G031810PF00004AAA2653941.8e-47161.8
TkA01G031810PF13401AAA_222652930.0002622.0
TkA01G031810PF20720nSTAND32653530.001219.2
TkA01G031810PF13521AAA_282652910.003318.4
TkA01G031810PF01078Mg_chelatase2652830.003717.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O80983Arabidopsis thalianasp|O80983|FTSH4_ARATH ATP-dependent zinc metalloprotease FTSH 4, mitochondrial77.300%Swiss-ProtHigh
Q9FGM0Arabidopsis thalianasp|Q9FGM0|FTSHB_ARATH ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial51.800%Swiss-ProtHigh
Q8LQJ8Oryza sativa subsp. japonicasp|Q8LQJ8|FTSH5_ORYSJ ATP-dependent zinc metalloprotease FTSH 5, mitochondrial75.100%Swiss-ProtHigh
Q8LQJ9Oryza sativa subsp. japonicasp|Q8LQJ9|FTSH4_ORYSJ ATP-dependent zinc metalloprotease FTSH 4, mitochondrial77.500%Swiss-ProtHigh

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