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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G029140
Reference: TK1151 Chr: Chr01 Coordinates: 7482909-7483619 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

675 bp · TkA01G029140|TK1151|cDNA

ATGAAAGACGATGGTCGTCACGACTCGGCCATGTTTGAAGAGTTAACTACGCTACCGCTACAGCTCCGCCACCTCCAAATGGCGGAATACGGCGACTCGTATGATGTTGCGGAGAAGGAAGGAGATGTAGAAATGGACGATTACTTCTGTATGTATGAGTTCAAGGTGAAGAGGTGTGCACGAGGGAGGTCACACGACTGGACTGACTGTCCGTACACTCATTCCGGAGAGAAAGCTCGACGTCGTGATCCACGTAAGTT...

CDS

Download CDS FASTA

675 bp · TkA01G029140|TK1151|CDS

ATGAAAGACGATGGTCGTCACGACTCGGCCATGTTTGAAGAGTTAACTACGCTACCGCTACAGCTCCGCCACCTCCAAATGGCGGAATACGGCGACTCGTATGATGTTGCGGAGAAGGAAGGAGATGTAGAAATGGACGATTACTTCTGTATGTATGAGTTCAAGGTGAAGAGGTGTGCACGAGGGAGGTCACACGACTGGACTGACTGTCCGTACACTCATTCCGGAGAGAAAGCTCGACGTCGTGATCCACGTAAGTT...

Protein

Download Protein FASTA

224 aa · TkA01G029140|TK1151|PROTEIN

MKDDGRHDSAMFEELTTLPLQLRHLQMAEYGDSYDVAEKEGDVEMDDYFCMYEFKVKRCARGRSHDWTDCPYTHSGEKARRRDPRKFHYSGNPCPEFRKGSCMKGDLCESAHGVFECWLHPSRYRTQPCKDGVHCSRRICFFAHTPEQLRILPPSQHHQDGSPRRLATDFSPSTYFSSSSSPTSTLYFPHCSTPMDSPPMSPVSSLDLVSSMRNLQIGLERPGG

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G029140
TK1151 IDTkA01G029140
OH-1004 IDLXL04_005626
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)94.000
Protein coverage (%)TK1151 98.661 / OH-1004 70.393
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G029140
LocationChr01:7482909-7483619 (+)
DescriptionSimilar to Os01g0192000: Zinc finger CCCH domain-containing protein 2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g25900 Zinc finger CCCH domain-containing protein 23. No verified direct reference in this release
At2g19810 Zinc finger CCCH domain-containing protein 20. No verified direct reference in this release
At4g29190 Zinc finger CCCH domain-containing protein 49. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os05g0195200 Zinc finger CCCH domain-containing protein 35. No verified direct reference in this release
Os01g0192000 Involved in leaf senescence delay. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_005626 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0006979 response to oxidative stress Biological Process
GO:0009867 jasmonic acid mediated signaling pathway Biological Process
GO:0010150 leaf senescence Biological Process
GO:0050832 defense response to fungus Biological Process
GO:0051607 defense response to virus Biological Process
GO:0061157 mRNA destabilization Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0003677 DNA binding Molecular Function
GO:0003700 DNA-binding transcription factor activity Molecular Function
KEGG gene cross-reference
ath:AT2G19810
ath:AT2G25900
ath:AT4G29190
dosa:Os01g0192000
dosa:Os05g0195200
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.525
Rank 1 · TkA01G029140 · TK1151
Cytoplasm0.498
Rank 2 · TkA01G029140 · TK1151
Mitochondrion0.066
Rank 3 · TkA01G029140 · TK1151
Cell membrane0.045
Rank 4 · TkA01G029140 · TK1151
Endoplasmic reticulum0.025
Rank 5 · TkA01G029140 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16131Torus40-75 aa
PF25512zf-CCCH_AtC3H2348-81 aa
PF18345zf_CCCH_457-62 aa
PF18044zf-CCCH_458-62 aa
PF25542zf-CCCH_1267-75 aa
PF18345zf_CCCH_469-74 aa
PF14608zf-CCCH_269-74 aa
PF25427zf-CCCH_UNK69-80 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G029140PF16131Torus40750.1813.1
TkA01G029140PF25512zf-CCCH_AtC3H2348818.3e-2070.9
TkA01G029140PF18345zf_CCCH_457620.01116.5
TkA01G029140PF18044zf-CCCH_458620.2212.1
TkA01G029140PF25542zf-CCCH_1267750.910.0
TkA01G029140PF18345zf_CCCH_469740.01116.5
TkA01G029140PF14608zf-CCCH_269741.310.4
TkA01G029140PF25427zf-CCCH_UNK69802.19.0
TkA01G029140PF00642zf-CCCH70740.0215.5
TkA01G029140PF00642zf-CCCH921130.0215.5
TkA01G029140PF25543zf-CCCH_tandem92920.08313.7
TkA01G029140PF18044zf-CCCH_4931120.2212.1
TkA01G029140PF14608zf-CCCH_2931081.310.4
TkA01G029140PF18345zf_CCCH_4941120.01116.5
TkA01G029140PF16131Torus941140.1813.1
TkA01G029140PF25427zf-CCCH_UNK991142.19.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O82307Arabidopsis thalianasp|O82307|C3H23_ARATH Zinc finger CCCH domain-containing protein 2364.300%Swiss-ProtHigh
O82199Arabidopsis thalianasp|O82199|C3H20_ARATH Zinc finger CCCH domain-containing protein 2078.500%Swiss-ProtLow
Q9M0G2Arabidopsis thalianasp|Q9M0G2|C3H49_ARATH Zinc finger CCCH domain-containing protein 4978.300%Swiss-ProtLow
Q6L4N4Oryza sativa subsp. japonicasp|Q6L4N4|C3H35_ORYSJ Zinc finger CCCH domain-containing protein 3574.600%Swiss-ProtMedium
Q9FU27Oryza sativa subsp. japonicasp|Q9FU27|C3H2_ORYSJ Zinc finger CCCH domain-containing protein 273.000%Swiss-ProtMedium

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