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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G028230
Reference: TK1151 Chr: Chr01 Coordinates: 7236588-7238110 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1455 bp · TkA01G028230|TK1151|cDNA

ATGACCAGAGACCCACCGCCACCGCCACCACTGAAACGCCTACACATACTCTTCTCCTTCCTTTTCATCACCCTGGTTAAGCTTTCCGGTGCAACTTCACAACAGTTTTTAACGTCCGAGCGATCCATATTGCTTAACCTCAAACAACAATGGGGGAATCCGCCGTCACTGGGGGACTGGAGCGCTTCTTCATCGCCGTGCAACTGGATAGGAGTTTCATGCGACGACGGCTCTGTTACTTCACTCGATCTTAGGAACAA...

CDS

Download CDS FASTA

1455 bp · TkA01G028230|TK1151|CDS

ATGACCAGAGACCCACCGCCACCGCCACCACTGAAACGCCTACACATACTCTTCTCCTTCCTTTTCATCACCCTGGTTAAGCTTTCCGGTGCAACTTCACAACAGTTTTTAACGTCCGAGCGATCCATATTGCTTAACCTCAAACAACAATGGGGGAATCCGCCGTCACTGGGGGACTGGAGCGCTTCTTCATCGCCGTGCAACTGGATAGGAGTTTCATGCGACGACGGCTCTGTTACTTCACTCGATCTTAGGAACAA...

Protein

Download Protein FASTA

484 aa · TkA01G028230|TK1151|PROTEIN

MTRDPPPPPPLKRLHILFSFLFITLVKLSGATSQQFLTSERSILLNLKQQWGNPPSLGDWSASSSPCNWIGVSCDDGSVTSLDLRNKKLTGNIPPFICELRNLKYLWVSDNFLVGEFPRVLYNCSRLVEIVISRNGFTGRLPNDIDRLSVVKYIDLGGNNFTGDIPPTIGNLSVLMHLFLNENSFSGSIPSEIGNLSNLLTLELSSNIFAAGEIPPEFMKLRNLTYFNMAQTNRIGKIPESLVKLFDLESLDLSSNNLEG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G028230
TK1151 IDTkA01G028230
OH-1004 IDLXL04_005607
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)56.100
Protein coverage (%)TK1151 23.347 / OH-1004 11.480
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G028230
LocationChr01:7236588-7238110 (+)
DescriptionSimilar to HSL1: Receptor-like protein kinase HSL1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g25910 Required for defense against powdery mildew pathogen. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_005607 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006468 protein phosphorylation Biological Process
GO:0006952 defense response Biological Process
GO:0010067 procambium histogenesis Biological Process
GO:0010087 phloem or xylem histogenesis Biological Process
GO:0010102 lateral root morphogenesis Biological Process
GO:0010183 pollen tube guidance Biological Process
GO:0010227 floral organ abscission Biological Process
GO:0010468 regulation of gene expression Biological Process
GO:0030154 cell differentiation Biological Process
GO:0045490 pectin catabolic process Biological Process
GO:0046777 protein autophosphorylation Biological Process
GO:0050829 defense response to Gram-negative bacterium Biological Process
KEGG gene cross-reference
ath:AT1G28440
ath:AT4G28490
ath:AT4G28650
ath:AT5G65710
mtr:11439632
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.813
Rank 1 · TkA01G028230 · TK1151
Endoplasmic reticulum0.084
Rank 2 · TkA01G028230 · TK1151
Cytoplasm0.059
Rank 3 · TkA01G028230 · TK1151
Nucleus0.037
Rank 4 · TkA01G028230 · TK1151
Extracellular0.030
Rank 5 · TkA01G028230 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08263LRRNT_239-75 aa
PF13855LRR_878-136 aa
PF25013LRR_Zer-178-110 aa
PF00560LRR_179-100 aa
PF12799LRR_479-114 aa
PF13516LRR_679-85 aa
PF29594LRR_SKP279-137 aa
PF23598LRR_1481-128 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G028230PF08263LRRNT_239752.4e-0938.0
TkA01G028230PF13855LRR_8781365.3e-30103.7
TkA01G028230PF25013LRR_Zer-1781103e-0524.9
TkA01G028230PF00560LRR_1791005.8e-45142.3
TkA01G028230PF12799LRR_4791144.5e-2691.0
TkA01G028230PF13516LRR_679850.000520.6
TkA01G028230PF29594LRR_SKP2791370.6310.0
TkA01G028230PF23598LRR_14811285e-2795.3
TkA01G028230PF13855LRR_81011615.3e-30103.7
TkA01G028230PF13516LRR_61011110.000520.6
TkA01G028230PF00560LRR_11021245.8e-45142.3
TkA01G028230PF30352SIMR_M1021470.1512.0
TkA01G028230PF23286LRR_131191460.003417.8
TkA01G028230PF12799LRR_41261664.5e-2691.0
TkA01G028230PF00560LRR_11271485.8e-45142.3
TkA01G028230PF24758LRR_At5g563701381860.01216.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q7FZR1Arabidopsis thalianasp|Q7FZR1|RLP52_ARATH Receptor-like protein 5242.900%Swiss-ProtLow

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