TkA01G024800 | RubberDandelionOmics

Gene overview

TkA01G024800

Reference: TK1151 Chr: Chr01 Coordinates: 6378709-6379290 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

582 bp · TkA01G024800|TK1151|cDNA

ATCTATGGCAAGCTGCCTGAATGTCCACACGAAGGATGCAAATCCGAGCTTGAAATCGAGACCTGCAAGGGGTTCTTAAATCCAGAATTGTATGATATTATGAGCTCACATGTAAAAGAAGCTTCAATTCCTTCAACTGCGAAAGTTTACTGTCCAATTTCTAGTTGCTCTGCTTTAATGTCGAAAACAGAGCTTCAAAAACATGTTTCTACGTCTTCTCGAGCATCTGGAAAGAGAAAATGCGTGAAATGTCATCGGCG...

CDS

Download CDS FASTA

582 bp · TkA01G024800|TK1151|CDS

ATCTATGGCAAGCTGCCTGAATGTCCACACGAAGGATGCAAATCCGAGCTTGAAATCGAGACCTGCAAGGGGTTCTTAAATCCAGAATTGTATGATATTATGAGCTCACATGTAAAAGAAGCTTCAATTCCTTCAACTGCGAAAGTTTACTGTCCAATTTCTAGTTGCTCTGCTTTAATGTCGAAAACAGAGCTTCAAAAACATGTTTCTACGTCTTCTCGAGCATCTGGAAAGAGAAAATGCGTGAAATGTCATCGGCG...

Protein

Download Protein FASTA

193 aa · TkA01G024800|TK1151|PROTEIN

IYGKLPECPHEGCKSELEIETCKGFLNPELYDIMSSHVKEASIPSTAKVYCPISSCSALMSKTELQKHVSTSSRASGKRKCVKCHRRFCMNCNVAWHNDMTCGEFIESSEYKSANEAKLKSLASSKKWRQYANNRTQIQRWNSLSNRRLSQPLTETHHGRKKNRLRFHCNYPSSIPIRVKEEMLFFDDVIDGS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G024800`
TK1151 ID	TkA01G024800
OH-1004 ID	LXL04_005662
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.500
Protein coverage (%)	TK1151 100.000 / OH-1004 78.776 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA01G024800`
Location	Chr01:6378709-6379290 (+)
Description	Protein of unknown function
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_005662` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0000209 protein polyubiquitination Biological Process GO:0006511 ubiquitin-dependent protein catabolic process Biological Process GO:0009738 abscisic acid-activated signaling pathway Biological Process GO:0009740 gibberellic acid mediated signaling pathway Biological Process GO:0009788 negative regulation of abscisic acid-activated signaling pathway Biological Process GO:0010431 seed maturation Biological Process GO:0010476 gibberellin mediated signaling pathway Biological Process GO:0140547 acquisition of seed longevity Biological Process GO:0000151 ubiquitin ligase complex Cellular Component GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005886 plasma membrane Cellular Component
KEGG gene cross-reference	ath:AT2G26130 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.440

Rank 1 · TkA01G024800 · TK1151

Cytoplasm0.416

Rank 2 · TkA01G024800 · TK1151

Mitochondrion0.098

Rank 3 · TkA01G024800 · TK1151

Cell membrane0.085

Rank 4 · TkA01G024800 · TK1151

Endoplasmic reticulum0.065

Rank 5 · TkA01G024800 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01485IBR7-17 aa

PF07975C1_412-15 aa

PF01485IBR46-102 aa

PF07975C1_464-99 aa

PF07975C1_4161-170 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G024800	`PF01485`	IBR	7	17	1.1e-09	38.9
TkA01G024800	`PF07975`	C1_4	12	15	0.02	15.9
TkA01G024800	`PF01485`	IBR	46	102	1.1e-09	38.9
TkA01G024800	`PF07975`	C1_4	64	99	0.02	15.9
TkA01G024800	`PF07975`	C1_4	161	170	0.02	15.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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