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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G023580
Reference: TK1151 Chr: Chr01 Coordinates: 6060484-6064078 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1437 bp · TkA01G023580|TK1151|cDNA

TCTCCTCTCTCTAGTTTCACTCTTTCATCTCCGCAGATACATAATATTTTTGTCTCCCTCCATCAAATAACAATATTCCAACAGATCGATGGCAGAAAAATATGAAGCTAATGGTGTTTTGGGCAAAGAGATCACATGCACAGCTGCCGTGGCTTGGGGTCCTGGGCAGCCTTTCTCCTTACAACAAATTCGTGTCCTACCACCTCAGAAATTGGAAGTCCGGATCAAAATCTTGTACACATCAATTTGCCATACTGATC...

CDS

Download CDS FASTA

1167 bp · TkA01G023580|TK1151|CDS

ATGGCAGAAAAATATGAAGCTAATGGTGTTTTGGGCAAAGAGATCACATGCACAGCTGCCGTGGCTTGGGGTCCTGGGCAGCCTTTCTCCTTACAACAAATTCGTGTCCTACCACCTCAGAAATTGGAAGTCCGGATCAAAATCTTGTACACATCAATTTGCCATACTGATCTTAGCGCATGGTTGGGTGAGAATGAATCGCAACGGGTGTATCCTCGGATTTTTGGCCACGAGGCATCTGGGGTGGTTGAGAGTATAGG...

Protein

Download Protein FASTA

388 aa · TkA01G023580|TK1151|PROTEIN

MAEKYEANGVLGKEITCTAAVAWGPGQPFSLQQIRVLPPQKLEVRIKILYTSICHTDLSAWLGENESQRVYPRIFGHEASGVVESIGEGVAGMKEGDHVLTIFNGECGECVYCKSESTNLCEKFRVDPLRSTMRNDGKTRFLTQEGSPIYHFLNTSTFSEYTVIDSACVVKIDPKAPLDKMTLLSCCLSTGFGAVTNTANVHKGSTVAVFGLGAVGLAVIHGAKTRGASKIIGVDINAEKHTKGRMMGMTNFINPKDLKT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G023580
TK1151 IDTkA01G023580
OH-1004 IDLXL04_026242
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)72.400
Protein coverage (%)TK1151 97.165 / OH-1004 95.420
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G023580
LocationChr01:6060484-6064078 (-)
DescriptionSimilar to At1g32780: Alcohol dehydrogenase-like 3
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g32780 Alcohol dehydrogenase-like 3. No verified direct reference in this release
At1g64710 Alcohol dehydrogenase-like 4. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
UniProt: Q4R1E8 Alcohol dehydrogenase 2. No verified direct reference in this release
Os11g0210500 Alcohol dehydrogenase 2. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_026242 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0046294 formaldehyde catabolic process Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
GO:0004022 alcohol dehydrogenase (NAD+) activity Molecular Function
GO:0008270 zinc ion binding Molecular Function
GO:0051903 S-(hydroxymethyl)glutathione dehydrogenase [NAD(P)+] activity Molecular Function
KEGG gene cross-reference
ath:AT1G32780
ath:AT1G64710
sot:102577519
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.530
Rank 1 · TkA01G023580 · TK1151
Nucleus0.160
Rank 2 · TkA01G023580 · TK1151
Mitochondrion0.123
Rank 3 · TkA01G023580 · TK1151
Cell membrane0.119
Rank 4 · TkA01G023580 · TK1151
Peroxisome0.101
Rank 5 · TkA01G023580 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08240ADH_N43-173 aa
PF01262AlaDh_PNT_C86-93 aa
PF08240ADH_N189-206 aa
PF01262AlaDh_PNT_C195-269 aa
PF028262-Hacid_dh_C202-243 aa
PF16912Glu_dehyd_C203-374 aa
PF03721UDPG_MGDP_dh_N206-240 aa
PF00107ADH_zinc_N214-339 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G023580PF08240ADH_N431732.3e-2176.7
TkA01G023580PF01262AlaDh_PNT_C86934.67.3
TkA01G023580PF08240ADH_N1892062.3e-2176.7
TkA01G023580PF01262AlaDh_PNT_C1952694.67.3
TkA01G023580PF028262-Hacid_dh_C2022430.02114.9
TkA01G023580PF16912Glu_dehyd_C2033740.003817.4
TkA01G023580PF03721UDPG_MGDP_dh_N2062400.0913.2
TkA01G023580PF00107ADH_zinc_N2143391.6e-1970.8
TkA01G023580PF01728FtsJ2232770.2811.8
TkA01G023580PF08240ADH_N2532842.3e-2176.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
A1L4Y2Arabidopsis thalianasp|A1L4Y2|ADHL3_ARATH Alcohol dehydrogenase-like 364.900%Swiss-ProtHigh
Q8VZ49Arabidopsis thalianasp|Q8VZ49|ADHL4_ARATH Alcohol dehydrogenase-like 463.000%Swiss-ProtHigh
Q4R1E8Oryza sativa subsp. indicasp|Q4R1E8|ADH2_ORYSI Alcohol dehydrogenase 249.900%Swiss-ProtMedium
Q0ITW7Oryza sativa subsp. japonicasp|Q0ITW7|ADH2_ORYSJ Alcohol dehydrogenase 249.900%Swiss-ProtMedium

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