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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G022800
Reference: TK1151 Chr: Chr01 Coordinates: 5838876-5843020 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2805 bp · TkA01G022800|TK1151|cDNA

CTTCCCTTCAATCTTCACTCTTCGGTTCACGTTCTAATTTCTAACCTAGCCCTAACTTTCTAACCTAGCGAGTAGCGACTGCCGACCTCCAATCCTCCATGGCGCCATCACTCCTTCAGGCTTAGTCGACCAGCGATCGCCGATCGTCACTCCTCAGGCCTCAGTCCCTCACCGTCGACCAGACGATCCTTTTTACTTGTGATTCTGTAAAACGCTGCCTCATCTCCTTCGTTCTTCTCCAAAACTCTCATCTGCGCTCC...

CDS

Download CDS FASTA

1440 bp · TkA01G022800|TK1151|CDS

ATGCCGTCAATCGGCGGCGTTAGATCGTCACCTGAGAAACGGCGGCTGAGATCTAATTCAGATTTGGTGGATGATACAGTTATCAGTACTCCATCCAAGCCATGCTTCCCGCTGAAAACCAAATCTCCTCGTCGTTGTTGCGATGACAGTCCCAACAGAAGGCGAACAAATGTGAATGAAACAGTTGCTATTGATAATATACCTAAAATGAGGAAATCCCCAAAGAAAAAACCGATCTGGAATCCAACAGATTCGGAGCA...

Protein

Download Protein FASTA

479 aa · TkA01G022800|TK1151|PROTEIN

MPSIGGVRSSPEKRRLRSNSDLVDDTVISTPSKPCFPLKTKSPRRCCDDSPNRRRTNVNETVAIDNIPKMRKSPKKKPIWNPTDSEQLSAVKEALHVSTAPSMPVCREVEQKRIVEFCRQCVEQDKAGSLYVCGCPGTGKSLSMENVNKSLAVWAKETGGELPQVLTINCTSLSTTSEIFNKILENSQPHKKVNNRSTPLRQIQQLYSQKQQSTGTKMMLVIADELDYLITKDRVVLHDLFMLTTLPFSKLILIGIANAI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA01G022800
TK1151 IDTkA01G022800
OH-1004 IDLXL04_005710
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)99.600
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G022800
LocationChr01:5838876-5843020 (-)
DescriptionSimilar to CDC6B: Cell division control protein 6 homolog B
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g07270 May be involved in the initiation of DNA replication. No verified direct reference in this release
At2g29680 May be involved in the initiation of DNA replication.
Expression and stability of Arabidopsis CDC6 are associated with endoreplication.2001 · DOI: 10.1105/tpc.010329

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0856000 May be involved in the initiation of DNA replication. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_005710 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000076 DNA replication checkpoint signaling Biological Process
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity Biological Process
GO:0006270 DNA replication initiation Biological Process
GO:0007089 traversing start control point of mitotic cell cycle Biological Process
GO:0008156 negative regulation of DNA replication Biological Process
GO:0008285 negative regulation of cell population proliferation Biological Process
GO:0030071 regulation of mitotic metaphase/anaphase transition Biological Process
GO:0032467 positive regulation of cytokinesis Biological Process
GO:0033314 mitotic DNA replication checkpoint signaling Biological Process
GO:0042023 DNA endoreduplication Biological Process
GO:0045737 positive regulation of cyclin-dependent protein serine/threonine kinase activity Biological Process
GO:0048146 positive regulation of fibroblast proliferation Biological Process
KEGG gene cross-reference
ath:AT1G07270
ath:AT2G29680
dosa:Os01g0856000
hsa:990
mmu:23834
osa:4324832
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.888
Rank 1 · TkA01G022800 · TK1151
Cytoplasm0.150
Rank 2 · TkA01G022800 · TK1151
Mitochondrion0.033
Rank 3 · TkA01G022800 · TK1151
Cell membrane0.020
Rank 4 · TkA01G022800 · TK1151
Endoplasmic reticulum0.011
Rank 5 · TkA01G022800 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12499DUF370729-122 aa
PF05673DUF81580-185 aa
PF13191AAA_16105-186 aa
PF05970PIF1109-151 aa
PF00931NB-ARC120-209 aa
PF25201nSTAND6125-206 aa
PF13401AAA_22126-245 aa
PF13245AAA_19127-229 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G022800PF12499DUF3707291220.3612.0
TkA01G022800PF05673DUF815801850.2811.0
TkA01G022800PF13191AAA_161051868.3e-0523.9
TkA01G022800PF05970PIF11091510.04114.2
TkA01G022800PF00931NB-ARC1202090.01116.0
TkA01G022800PF25201nSTAND61252060.05414.2
TkA01G022800PF13401AAA_221262452.1e-1351.4
TkA01G022800PF13245AAA_191272290.02715.4
TkA01G022800PF00004AAA1312670.0008420.5
TkA01G022800PF09848SLFN-g3_helicase1322310.1611.9
TkA01G022800PF22606Cdc6-ORC-like_ATPase_lid2853422.3e-1040.9
TkA01G022800PF22703Cdc6_lid2923370.0008219.9
TkA01G022800PF17872AAA_lid_103073402.9e-0524.9
TkA01G022800PF13401AAA_223273812.1e-1351.4
TkA01G022800PF13191AAA_163333478.3e-0523.9
TkA01G022800PF09079WHD_Cdc63754661.9e-2279.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8W032Arabidopsis thalianasp|Q8W032|CDC6B_ARATH DNA replication factor CDC6B58.000%Swiss-ProtHigh
O82387Arabidopsis thalianasp|O82387|CDC6A_ARATH DNA replication factor CDC654.900%Swiss-ProtHigh
Q5N897Oryza sativa subsp. japonicasp|Q5N897|CDC6_ORYSJ DNA replication factor CDC660.500%Swiss-ProtHigh

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