TkA01G021460 | RubberDandelionOmics

Gene overview

TkA01G021460

Reference: TK1151 Chr: Chr01 Coordinates: 5555679-5557588 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1348 bp · TkA01G021460|TK1151|cDNA

AAAAGAATATGAAAATGGCCATGGAAATGAGCATGAACTCATTGTTTTTCGTTGTTTTGTGTTTGATTCATGTTTCAAGATGTGTTTCTTACACCAATTTTGCTTTTGGAGATTCGGTTGTAGATGCTGGAAACAATAACCACTTGGCAAGTCTCTCCAAGGCCGATTACTCTCCATATGGCATAGACTTTGCACCTTCTGGAGGCAAGCCCACAGGAAGATACACTAATGGTTTCACCATTATTGACATTATTGCACAA...

CDS

Download CDS FASTA

1128 bp · TkA01G021460|TK1151|CDS

ATGAAAATGGCCATGGAAATGAGCATGAACTCATTGTTTTTCGTTGTTTTGTGTTTGATTCATGTTTCAAGATGTGTTTCTTACACCAATTTTGCTTTTGGAGATTCGGTTGTAGATGCTGGAAACAATAACCACTTGGCAAGTCTCTCCAAGGCCGATTACTCTCCATATGGCATAGACTTTGCACCTTCTGGAGGCAAGCCCACAGGAAGATACACTAATGGTTTCACCATTATTGACATTATTGCACAAGCCTTGGG...

Protein

Download Protein FASTA

375 aa · TkA01G021460|TK1151|PROTEIN

MKMAMEMSMNSLFFVVLCLIHVSRCVSYTNFAFGDSVVDAGNNNHLASLSKADYSPYGIDFAPSGGKPTGRYTNGFTIIDIIAQALGAKTLASPSLAGNAASNALLGGINFGSGASGILEETGAVYLGRIPLGKQIDHFEQSRAEMVQTMGENRTQDLLKNAIFSITIGNNDIITYFLPQIPFIGNYNDVSHTVLQETMVAHMASHLKRLHTLGARKFVVVDIGPIGCLPFVRAVHLLPDGKCHEEMNTLIRGYNEKLRQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G021460`
TK1151 ID	TkA01G021460
OH-1004 ID	LXL04_013494
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	40.900
Protein coverage (%)	TK1151 90.933 / OH-1004 80.420 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G021460

Location Chr01:5555679-5557588 (+)

Description Similar to At2g23540: GDSL esterase/lipase At2g23540

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g41890`	GDSL esterase/lipase At5g41890.	No verified direct reference in this release
`At4g16230`	GDSL esterase/lipase At4g16230.	No verified direct reference in this release
`At3g50400`	GDSL esterase/lipase At3g50400.	No verified direct reference in this release
`At2g23540`	GDSL esterase/lipase At2g23540.	No verified direct reference in this release
`At5g08460`	GDSL esterase/lipase At5g08460.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_013494 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0016042 lipid catabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016298 lipase activity Molecular Function

GO:0016788 hydrolase activity, acting on ester bonds Molecular Function

KEGG gene cross-reference

ath:AT2G23540

ath:AT3G50400

ath:AT4G16230

ath:AT5G15720

ath:AT5G41890

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.574

Rank 1 · TkA01G021460 · TK1151

Lysosome / Vacuole0.109

Rank 2 · TkA01G021460 · TK1151

Endoplasmic reticulum0.107

Rank 3 · TkA01G021460 · TK1151

Cell membrane0.092

Rank 4 · TkA01G021460 · TK1151

Cytoplasm0.089

Rank 5 · TkA01G021460 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00657Lipase_GDSL31-354 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G021460	`PF00657`	Lipase_GDSL	31	354	8.2e-30	105.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FJ25`	Arabidopsis thaliana	sp\|Q9FJ25\|GDL81_ARATH GDSL esterase/lipase At5g41890	52.400%	Swiss-Prot	High
`O23470`	Arabidopsis thaliana	sp\|O23470\|GDL64_ARATH GDSL esterase/lipase At4g16230	45.600%	Swiss-Prot	Medium
`Q9M2R9`	Arabidopsis thaliana	sp\|Q9M2R9\|GDL58_ARATH GDSL esterase/lipase At3g50400	40.600%	Swiss-Prot	Medium
`O80470`	Arabidopsis thaliana	sp\|O80470\|GDL38_ARATH GDSL esterase/lipase At2g23540	40.800%	Swiss-Prot	Medium
`Q9FNP2`	Arabidopsis thaliana	sp\|Q9FNP2\|GDL75_ARATH GDSL esterase/lipase At5g08460	36.600%	Swiss-Prot	Medium

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