TkA01G019220 | RubberDandelionOmics

Gene overview

TkA01G019220

Reference: TK1151 Chr: Chr01 Coordinates: 4917106-4917736 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

558 bp · TkA01G019220|TK1151|cDNA

GTGAGAAAAGTGGTGGTGATGGGATTGGCGCCAATTGGATGTGCCCCTTACTATTTGTGGCAATATGAGAGTGAGGATGGAGAATGTATAAAAGTGATAAATAATATGATAATGGAATTTAATTTCGTTATGAGATTTACAATTTCAGAACTTCGAAAAGAACTCACGGGTGCCAATTTGATATTTTGTGATGCGTATCAAGGCTCCATGGATATCATGAAAAATGTAGATAAATATGGGTTTAGTGTGAAAAATGAAGC...

CDS

Download CDS FASTA

453 bp · TkA01G019220|TK1151|CDS

ATGGGATTGGCGCCAATTGGATGTGCCCCTTACTATTTGTGGCAATATGAGAGTGAGGATGGAGAATGTATAAAAGTGATAAATAATATGATAATGGAATTTAATTTCGTTATGAGATTTACAATTTCAGAACTTCGAAAAGAACTCACGGGTGCCAATTTGATATTTTGTGATGCGTATCAAGGCTCCATGGATATCATGAAAAATGTAGATAAATATGGGTTTAGTGTGAAAAATGAAGCTTGTTGTGGATTGGGGCG...

Protein

Download Protein FASTA

150 aa · TkA01G019220|TK1151|PROTEIN

MGLAPIGCAPYYLWQYESEDGECIKVINNMIMEFNFVMRFTISELRKELTGANLIFCDAYQGSMDIMKNVDKYGFSVKNEACCGLGRYNGWMMCMAPEMACANASSHLWWDQFHPTAKVNEILADNVWSGLHTSMCYPMNMGDMVAQMAS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G019220`
TK1151 ID	TkA01G019220
OH-1004 ID	LXL04_005747
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 28.143 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G019220

Location Chr01:4917106-4917736 (+)

Description Similar to GLIP7: GDSL esterase/lipase 7

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g71691`	GDSL esterase/lipase At1g71691.	No verified direct reference in this release
`At1g74460`	GDSL esterase/lipase At1g74460.	No verified direct reference in this release
`At3g53100`	GDSL esterase/lipase At3g53100.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_005747 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009627 systemic acquired resistance Biological Process

GO:0016042 lipid catabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0048046 apoplast Cellular Component

GO:0099503 secretory vesicle Cellular Component

GO:0016298 lipase activity Molecular Function

GO:0016788 hydrolase activity, acting on ester bonds Molecular Function

KEGG gene cross-reference

ath:AT1G29660

ath:AT1G71250

ath:AT1G71691

ath:AT5G08460

ath:AT5G15720

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.784

Rank 1 · TkA01G019220 · TK1151

Lysosome / Vacuole0.070

Rank 2 · TkA01G019220 · TK1151

Cytoplasm0.054

Rank 3 · TkA01G019220 · TK1151

Endoplasmic reticulum0.042

Rank 4 · TkA01G019220 · TK1151

Cell membrane0.036

Rank 5 · TkA01G019220 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00657Lipase_GDSL2-126 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G019220	`PF00657`	Lipase_GDSL	2	126	2.2e-11	45.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SF78`	Arabidopsis thaliana	sp\|Q9SF78\|GDL29_ARATH GDSL esterase/lipase At1g71691	34.500%	Swiss-Prot	Medium
`Q9CA68`	Arabidopsis thaliana	sp\|Q9CA68\|GDL31_ARATH GDSL esterase/lipase At1g74460	32.800%	Swiss-Prot	Medium
`Q0WPI9`	Arabidopsis thaliana	sp\|Q0WPI9\|GDL59_ARATH GDSL esterase/lipase At3g53100	32.800%	Swiss-Prot	Medium

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