TkA01G018390 | RubberDandelionOmics

Gene overview

TkA01G018390

Reference: TK1151 Chr: Chr01 Coordinates: 4685395-4685877 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

435 bp · TkA01G018390|TK1151|cDNA

ATGAGAGTATGGTTAGGGACCTACGAGATGGCGGAGATGGCCGCCTACGCTTACGATCGAGCTGCGTATAAGTTACGAGGGGAATACGCACGTTTGAATTTTCCGAACGGAAAAGATACGCCGGCGTTTGGGTTGATCGGAGAACGTAAGCTGAGTGCTTTGAGAGCCACTGTGGATAACAAACTTGAGGCGATTTGTCACAAGGTTAGGAGAGAGAAAGCTCAGAAGAGGGAGGAGAGAAAGAAGGCTGCTGCTAAGGT...

CDS

Download CDS FASTA

435 bp · TkA01G018390|TK1151|CDS

ATGAGAGTATGGTTAGGGACCTACGAGATGGCGGAGATGGCCGCCTACGCTTACGATCGAGCTGCGTATAAGTTACGAGGGGAATACGCACGTTTGAATTTTCCGAACGGAAAAGATACGCCGGCGTTTGGGTTGATCGGAGAACGTAAGCTGAGTGCTTTGAGAGCCACTGTGGATAACAAACTTGAGGCGATTTGTCACAAGGTTAGGAGAGAGAAAGCTCAGAAGAGGGAGGAGAGAAAGAAGGCTGCTGCTAAGGT...

Protein

Download Protein FASTA

144 aa · TkA01G018390|TK1151|PROTEIN

MRVWLGTYEMAEMAAYAYDRAAYKLRGEYARLNFPNGKDTPAFGLIGERKLSALRATVDNKLEAICHKVRREKAQKREERKKAAAKVVGDSTAAVSFGGEESDMGSSSVSEEGLTVAEEAEIGGWSLSRMPSYDLDSIWEILAN

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G018390`
TK1151 ID	TkA01G018390
OH-1004 ID	LXL04_005758
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	90.000
Protein coverage (%)	TK1151 100.000 / OH-1004 57.971 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G018390

Location Chr01:4685395-4685877 (-)

Description Similar to ERF061: Ethylene-responsive transcription factor ERF061

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g64380`	Probably acts as a transcriptional activator.	No verified direct reference in this release
`At1g78080`	Probably acts as a transcriptional activator.	No verified direct reference in this release
`At1g22190`	Probably acts as a transcriptional activator.	No verified direct reference in this release
`At4g39780`	Probably acts as a transcriptional activator.	No verified direct reference in this release
`At2g22200`	Probably acts as a transcriptional activator.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_005758 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006970 response to osmotic stress Biological Process

GO:0009408 response to heat Biological Process

GO:0009409 response to cold Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009416 response to light stimulus Biological Process

GO:0009611 response to wounding Biological Process

GO:0009620 response to fungus Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009736 cytokinin-activated signaling pathway Biological Process

GO:0009873 ethylene-activated signaling pathway Biological Process

GO:0010116 positive regulation of abscisic acid biosynthetic process Biological Process

KEGG gene cross-reference

ath:AT1G22190

ath:AT1G64380

ath:AT1G78080

ath:AT2G22200

ath:AT4G39780

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.923

Rank 1 · TkA01G018390 · TK1151

Cytoplasm0.128

Rank 2 · TkA01G018390 · TK1151

Cell membrane0.042

Rank 3 · TkA01G018390 · TK1151

Endoplasmic reticulum0.028

Rank 4 · TkA01G018390 · TK1151

Plastid0.016

Rank 5 · TkA01G018390 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00847AP22-27 aa

PF18963DUF570328-38 aa

PF07946CCDC4749-84 aa

PF18963DUF5703116-133 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G018390	`PF00847`	AP2	2	27	7.4e-06	26.9
TkA01G018390	`PF18963`	DUF5703	28	38	0.038	14.3
TkA01G018390	`PF07946`	CCDC47	49	84	0.1	12.5
TkA01G018390	`PF18963`	DUF5703	116	133	0.038	14.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9C7W2`	Arabidopsis thaliana	sp\|Q9C7W2\|ERF61_ARATH Ethylene-responsive transcription factor ERF061	45.500%	Swiss-Prot	Medium
`Q8H1E4`	Arabidopsis thaliana	sp\|Q8H1E4\|RAP24_ARATH Ethylene-responsive transcription factor RAP2-4	41.800%	Swiss-Prot	Medium
`Q9LM15`	Arabidopsis thaliana	sp\|Q9LM15\|RA213_ARATH Ethylene-responsive transcription factor RAP2-13	52.300%	Swiss-Prot	Low
`O65665`	Arabidopsis thaliana	sp\|O65665\|ERF60_ARATH Ethylene-responsive transcription factor ERF060	50.000%	Swiss-Prot	Low
`Q9SIE4`	Arabidopsis thaliana	sp\|Q9SIE4\|ERF56_ARATH Ethylene-responsive transcription factor ERF056	51.400%	Swiss-Prot	Low

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