TkA01G017540 | RubberDandelionOmics

Gene overview

TkA01G017540

Reference: TK1151 Chr: Chr01 Coordinates: 4484579-4487914 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1471 bp · TkA01G017540|TK1151|cDNA

ATATTAACACTATTATTAATTTATTATAAATGATTAAAAATTAGAAACTTGAAAAAAATTAGAAACTTGAAAAGTGAAAACATTTTTTGGCTGTTGCTCCCTACGCGGCGTTAATTCGAACTGGCCAAAACAATTGGGGGATTCCAAAAATCAAAAGTGAAAATTTGAAACCATTCATAAAAACACACTCAGCCTCCATCGCACATCGAATCATCGATTTCACCAATCGCCGGATCGAACGGTGGCCGACTCCCCTGATC...

CDS

Download CDS FASTA

360 bp · TkA01G017540|TK1151|CDS

ATGAAACCCAACACAGAGACATATAATTGGGTGATCCAGGCTTATACAAGGGCAGAAGGCGCTGACAGGGTACAAGATGTTGCTGCAGTACTGGGAATGATGGTTGAAGATTACAAGAAAGCCATTCAGGAGTTAGTCTCACATACAACTAAGACGATCGACCCTAGAAAAGGGGTATTGAAGAGAAATTTGAGTAGAAATTATGATGTTGTACATCCTAAGAATCATAACGGACCTGTAAATCTCAGGTTGCAAGATGA...

Protein

Download Protein FASTA

119 aa · TkA01G017540|TK1151|PROTEIN

MKPNTETYNWVIQAYTRAEGADRVQDVAAVLGMMVEDYKKAIQELVSHTTKTIDPRKGVLKRNLSRNYDVVHPKNHNGPVNLRLQDEDEEDYEEHEDYDEEEHEVDSEKRTLVQFLMVC

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G017540`
TK1151 ID	TkA01G017540
OH-1004 ID	LXL04_014825
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	75.000
Protein coverage (%)	TK1151 57.983 / OH-1004 21.622 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA01G017540`
Location	Chr01:4484579-4487914 (+)
Description	Similar to LPD1: Dihydrolipoyl dehydrogenase 1, chloroplastic
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_014825` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006086 pyruvate decarboxylation to acetyl-CoA Biological Process GO:0006103 2-oxoglutarate metabolic process Biological Process GO:0045333 cellular respiration Biological Process GO:0046685 response to arsenic-containing substance Biological Process GO:0005730 nucleolus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005739 mitochondrion Cellular Component GO:0005759 mitochondrial matrix Cellular Component GO:0005829 cytosol Cellular Component GO:0005886 plasma membrane Cellular Component GO:0009507 chloroplast Cellular Component GO:0009570 chloroplast stroma Cellular Component
KEGG gene cross-reference	ath:AT3G16950 ath:AT4G16155 cthr:CTHT_0048590 hma:rrnB0197 syn:slr1096 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.535

Rank 1 · TkA01G017540 · TK1151

Cytoplasm0.361

Rank 2 · TkA01G017540 · TK1151

Mitochondrion0.100

Rank 3 · TkA01G017540 · TK1151

Endoplasmic reticulum0.072

Rank 4 · TkA01G017540 · TK1151

Cell membrane0.071

Rank 5 · TkA01G017540 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF06224AlkZ-like5-47 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G017540	`PF06224`	AlkZ-like	5	47	0.16	12.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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