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How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G017440
Reference: TK1151 Chr: Chr01 Coordinates: 4455386-4456358 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

790 bp · TkA01G017440|TK1151|cDNA

CCTTCCTACACCAAATCAATGTATATAAACCTGCTCATCTCACTCTCATCTCCATAAATATAACCAAGCTCCCATACCTCTTATGAACTATCACTAACACTACAAGTAAACCCACTTGAACGTCCTGCATCTAGTGTTGTAATATAAAGATATGGAGAGTGCTTGTGTTTTTGAACAGACGAAAGTCATCCATGAGCTAAATCAAGGAATAAAAATGGCGGAACAACTTAGGCTTAACCTAAATTCACATGAAGCTAGAG...

CDS

Download CDS FASTA

639 bp · TkA01G017440|TK1151|CDS

ATGGAGAGTGCTTGTGTTTTTGAACAGACGAAAGTCATCCATGAGCTAAATCAAGGAATAAAAATGGCGGAACAACTTAGGCTTAACCTAAATTCACATGAAGCTAGAGAATTCCTGATAAAGAACATCTTATCTTCATATGAAAAAGCTCTTTTTGTTCTTAAATCCGGCGGGCAGCTTCGGCCAAGTCCACAACCTGAATCCAGTCTGCCGAATTCATCAACATCAACAGGCAGCCTGCAAAGCAAAGAGTTCGGGTT...

Protein

Download Protein FASTA

212 aa · TkA01G017440|TK1151|PROTEIN

MESACVFEQTKVIHELNQGIKMAEQLRLNLNSHEAREFLIKNILSSYEKALFVLKSGGQLRPSPQPESSLPNSSTSTGSLQSKEFGFDENVFSKKRKASSPPHSPVFEITYKRIHTCNNVAQSPPPPPSPEKWGLDDILPSSFSSPSTPFGFTDDDFESLNFPNYSDDELFQGYSPPFISPATSESNYLTDFWGNSSTMDFPTESAYLYPDF

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA01G017440
TK1151 IDTkA01G017440
OH-1004 IDLXL04_005769
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)83.300
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G017440
LocationChr01:4455386-4456358 (-)
DescriptionSimilar to WRKY53: Probable WRKY transcription factor 53
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_005769 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0009617 response to bacterium Biological Process
GO:0009751 response to salicylic acid Biological Process
GO:0010150 leaf senescence Biological Process
GO:0010193 response to ozone Biological Process
GO:0031347 regulation of defense response Biological Process
GO:0042542 response to hydrogen peroxide Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:0045893 positive regulation of DNA-templated transcription Biological Process
GO:2000022 regulation of jasmonic acid mediated signaling pathway Biological Process
GO:0005634 nucleus Cellular Component
GO:0009507 chloroplast Cellular Component
KEGG gene cross-reference
ath:AT4G23810
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.903
Rank 1 · TkA01G017440 · TK1151
Cytoplasm0.298
Rank 2 · TkA01G017440 · TK1151
Mitochondrion0.027
Rank 3 · TkA01G017440 · TK1151
Cell membrane0.019
Rank 4 · TkA01G017440 · TK1151
Endoplasmic reticulum0.012
Rank 5 · TkA01G017440 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

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