TkA01G017400 | RubberDandelionOmics

Gene overview

TkA01G017400

Reference: TK1151 Chr: Chr01 Coordinates: 4441731-4442731 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

492 bp · TkA01G017400|TK1151|cDNA

AAGACACTTTCAGTAGGCTGCACGGGTGGAATATGCATTTGGGCAGCTTCATATCCTGGAAACACTGCATGTGTTAGACCAGGGGTTAATTCTGGAAGCCTCTCTAGAGGTTCTGGAGTTAAATGGACTCTAGTGGATTTTCTTCGTGTCCATAGTGATGAACAAATAACTGCACTTTCATGGAGTCCTGATGGAAGATATCCTAACTTGCTTTTCTCATCCGCCTCATATGGCAGCTCATCATTCACAATATGGGATGC...

CDS

Download CDS FASTA

492 bp · TkA01G017400|TK1151|CDS

AAGACACTTTCAGTAGGCTGCACGGGTGGAATATGCATTTGGGCAGCTTCATATCCTGGAAACACTGCATGTGTTAGACCAGGGGTTAATTCTGGAAGCCTCTCTAGAGGTTCTGGAGTTAAATGGACTCTAGTGGATTTTCTTCGTGTCCATAGTGATGAACAAATAACTGCACTTTCATGGAGTCCTGATGGAAGATATCCTAACTTGCTTTTCTCATCCGCCTCATATGGCAGCTCATCATTCACAATATGGGATGC...

Protein

Download Protein FASTA

163 aa · TkA01G017400|TK1151|PROTEIN

KTLSVGCTGGICIWAASYPGNTACVRPGVNSGSLSRGSGVKWTLVDFLRVHSDEQITALSWSPDGRYPNLLFSSASYGSSSFTIWDAAQAKHWHFPQEVYARGLLGSAIIFVVASSTNKEDTKFKRFWIQSNPRKCSSGEDVQVVENGDVEMSKFKDGNHMLF

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G017400`
TK1151 ID	TkA01G017400
OH-1004 ID	LXL04_036173
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	73.000
Protein coverage (%)	TK1151 54.601 / OH-1004 16.152 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G017400

Location Chr01:4441731-4442731 (-)

Description Similar to AAAS: Aladin

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g56900`	Aladin.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036173 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0001578 microtubule bundle formation Biological Process

GO:0006749 glutathione metabolic process Biological Process

GO:0006913 nucleocytoplasmic transport Biological Process

GO:0006979 response to oxidative stress Biological Process

GO:0009566 fertilization Biological Process

GO:0015031 protein transport Biological Process

GO:0035264 multicellular organism growth Biological Process

GO:0046822 regulation of nucleocytoplasmic transport Biological Process

GO:0051028 mRNA transport Biological Process

GO:0090307 mitotic spindle assembly Biological Process

GO:1902365 positive regulation of protein localization to spindle pole body Biological Process

GO:0000922 spindle pole Cellular Component

KEGG gene cross-reference

ath:AT3G56900

dme:Dmel_CG16892

hsa:8086

mmu:223921

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.565

Rank 1 · TkA01G017400 · TK1151

Cytoplasm0.345

Rank 2 · TkA01G017400 · TK1151

Cell membrane0.077

Rank 3 · TkA01G017400 · TK1151

Endoplasmic reticulum0.070

Rank 4 · TkA01G017400 · TK1151

Golgi apparatus0.066

Rank 5 · TkA01G017400 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25460Beta-prop_Aladin2-92 aa

PF00400WD403-14 aa

PF24105Beta-prop_CAF1B_HIR141-95 aa

PF00400WD4043-86 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G017400	`PF25460`	Beta-prop_Aladin	2	92	0.0016	18.4
TkA01G017400	`PF00400`	WD40	3	14	0.0017	19.6
TkA01G017400	`PF24105`	Beta-prop_CAF1B_HIR1	41	95	0.16	11.6
TkA01G017400	`PF00400`	WD40	43	86	0.0017	19.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8GWR1`	Arabidopsis thaliana	sp\|Q8GWR1\|AAAS_ARATH Aladin	68.100%	Swiss-Prot	Medium

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