TkA01G012610 | RubberDandelionOmics

Gene overview

TkA01G012610

Reference: TK1151 Chr: Chr01 Coordinates: 3297843-3298370 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

528 bp · TkA01G012610|TK1151|cDNA

ATGCCTGTTGTGTTTGGTATCGTTTTAGCGAGCAATAGCGAGCCTCTGTTTCATTTGTTCGGTTTTCTAATGTGTGTGGGATCGACCGCCGGCAGAGCGTTGAAATCGGTGGTGCAGGGGCTGTTATTGACTTCAGATTCGGAGAAACTCCATTCGATGAACCTGTTACTGTATATGGCGCCAATGGCAGCTATGATTTTACTCCCTTTCACTTTGTACATAGAAGGGAACGTGTTCGCGAAGACAATCGATAAAGCGAG...

CDS

Download CDS FASTA

528 bp · TkA01G012610|TK1151|CDS

ATGCCTGTTGTGTTTGGTATCGTTTTAGCGAGCAATAGCGAGCCTCTGTTTCATTTGTTCGGTTTTCTAATGTGTGTGGGATCGACCGCCGGCAGAGCGTTGAAATCGGTGGTGCAGGGGCTGTTATTGACTTCAGATTCGGAGAAACTCCATTCGATGAACCTGTTACTGTATATGGCGCCAATGGCAGCTATGATTTTACTCCCTTTCACTTTGTACATAGAAGGGAACGTGTTCGCGAAGACAATCGATAAAGCGAG...

Protein

Download Protein FASTA

175 aa · TkA01G012610|TK1151|PROTEIN

MPVVFGIVLASNSEPLFHLFGFLMCVGSTAGRALKSVVQGLLLTSDSEKLHSMNLLLYMAPMAAMILLPFTLYIEGNVFAKTIDKARTDSFMVFLLVGNATVAYLVNLTNFLVTKHTSALTLQVLGNAKAAVAAVVSVLIFKNPVTVMGISGFGVTIMGVVLYSEAKKRSKVTAH

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G012610`
TK1151 ID	TkA01G012610
OH-1004 ID	LXL04_005853
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 49.157 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G012610

Location Chr01:3297843-3298370 (-)

Description Similar to At1g12500: Probable sugar phosphate/phosphate translocator At1g12500

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g12500`	Probable sugar phosphate/phosphate translocator At1g12500.	No verified direct reference in this release
`At3g11320`	Probable sugar phosphate/phosphate translocator At3g11320.	No verified direct reference in this release
`At5g05820`	Probable sugar phosphate/phosphate translocator At5g05820.	No verified direct reference in this release
`At5g04160`	UDP-glucuronic acid transporter that modulates the polysaccharide composition of seed mucilage.	UUAT1 Is a Golgi-Localized UDP-Uronic Acid Transporter That Modulates the Polysaccharide Composition of Arabidopsis Seed Mucilage.2017 · DOI: 10.1105/tpc.16.00465
`At3g10290`	Probable sugar phosphate/phosphate translocator At3g10290.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_005853 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0015780 nucleotide-sugar transmembrane transport Biological Process

GO:0055085 transmembrane transport Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0015297 antiporter activity Molecular Function

KEGG gene cross-reference

ath:AT1G12500

ath:AT3G10290

ath:AT3G11320

ath:AT5G04160

ath:AT5G05820

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.619

Rank 1 · TkA01G012610 · TK1151

Endoplasmic reticulum0.192

Rank 2 · TkA01G012610 · TK1151

Cytoplasm0.105

Rank 3 · TkA01G012610 · TK1151

Cell membrane0.055

Rank 4 · TkA01G012610 · TK1151

Lysosome / Vacuole0.055

Rank 5 · TkA01G012610 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03151TPT1-164 aa

PF08449UAA11-166 aa

PF29234DUF851917-69 aa

PF00892EamA36-163 aa

PF29234DUF8519138-139 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G012610	`PF03151`	TPT	1	164	1.2e-23	84.7
TkA01G012610	`PF08449`	UAA	11	166	9e-09	35.6
TkA01G012610	`PF29234`	DUF8519	17	69	0.11	13.7
TkA01G012610	`PF00892`	EamA	36	163	7.2e-07	30.3
TkA01G012610	`PF29234`	DUF8519	138	139	0.11	13.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LDH3`	Arabidopsis thaliana	sp\|Q9LDH3\|PT112_ARATH Probable sugar phosphate/phosphate translocator At1g12500	85.500%	Swiss-Prot	High
`Q5XF09`	Arabidopsis thaliana	sp\|Q5XF09\|PT311_ARATH Probable sugar phosphate/phosphate translocator At3g11320	67.300%	Swiss-Prot	High
`Q6DBP3`	Arabidopsis thaliana	sp\|Q6DBP3\|PT505_ARATH Probable sugar phosphate/phosphate translocator At5g05820	67.300%	Swiss-Prot	High
`Q9FYE5`	Arabidopsis thaliana	sp\|Q9FYE5\|UUAT1_ARATH UDP-URONIC ACID TRANSPORTER 1	60.400%	Swiss-Prot	High
`Q9SS40`	Arabidopsis thaliana	sp\|Q9SS40\|PT310_ARATH Probable sugar phosphate/phosphate translocator At3g10290	58.600%	Swiss-Prot	High

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