TkA01G010710 | RubberDandelionOmics

Gene overview

TkA01G010710

Reference: TK1151 Chr: Chr01 Coordinates: 2898676-2901321 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1493 bp · TkA01G010710|TK1151|cDNA

TTCTTCCATGGCCATTCCTTTTATTCTTTCCCCTCTTATATATATACATACATTTATCTTTTTTTCTTTCCATCATTACATACACCAAATTACACACAGCTTGTGTGGAGCTGTGTGTGTTTTCTTTTGAACCTAAACATAAAGTAAACCAAACTAAATTCTTAATTTTGGTTGCTTTGTTCATCAGTTTTAGTTACAGAAACCATAAGTTGCGATTCTTAAAAAGTGGGTCAGAATCTTGGTTCTTTCTTCATTCATGA...

CDS

Download CDS FASTA

864 bp · TkA01G010710|TK1151|CDS

ATGTTGGGTGTCAAATCAAGAAATCTTCGAATGGTTCCGCCGGTAAAAAGTGGAGCTTCCACCACTGGCGGTGGTGGTAGGGATGTCGGTGTGGCTGCTTGGGAACTCAGGCCATGTGGAATGTTGGTGCAGAAGAGGAATTCAGATGTTACTCAAAGTCAAAACATAGTTCCTACCATTAAAGTCAAAGTCAAATACTGTTCATCCTATCATGAAGTCAACATTAGATCTCAAGCAACTTTTGGAGAATTGAAGAAAAT...

Protein

Download Protein FASTA

287 aa · TkA01G010710|TK1151|PROTEIN

MLGVKSRNLRMVPPVKSGASTTGGGGRDVGVAAWELRPCGMLVQKRNSDVTQSQNIVPTIKVKVKYCSSYHEVNIRSQATFGELKKMLAGPTGLNPLDQKIVFRDKERDSKAYLDVAGVKDGSRMVLFDDIFSREKRLVENIKSPKMEKAKKEIVDVTTEIDKLVKQVGNLEIEIYSGKKVEEKVLLNLIELLMSQLIKLDGIIADGDVKLQRRVQVKRVQKYIENLDVMKIRNSKNASNGGWANIQVPLQQHPNKVSFQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G010710`
TK1151 ID	TkA01G010710
OH-1004 ID	LXL04_005872
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G010710

Location Chr01:2898676-2901321 (+)

Description Similar to BAG1: BAG family molecular chaperone regulator 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g52060`	Co-chaperone that regulates diverse cellular pathways, such as programmed cell death and stress responses.	No verified direct reference in this release
`At5g07220`	Co-chaperone that regulates diverse cellular pathways, such as programmed cell death and stress responses.	No verified direct reference in this release
`At5g62100`	Co-chaperone that regulates diverse cellular pathways, such as programmed cell death and stress responses.	No verified direct reference in this release
`At3g51780`	Co-chaperone that regulates diverse cellular pathways, such as programmed cell death and stress responses.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_005872 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006612 protein targeting to membrane Biological Process

GO:0009409 response to cold Biological Process

GO:0009651 response to salt stress Biological Process

GO:0010119 regulation of stomatal movement Biological Process

GO:0010228 vegetative to reproductive phase transition of meristem Biological Process

GO:0043268 positive regulation of potassium ion transport Biological Process

GO:0050821 protein stabilization Biological Process

GO:0071629 cytoplasm protein quality control by the ubiquitin-proteasome system Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

KEGG gene cross-reference

ath:AT3G51780

ath:AT5G07220

ath:AT5G52060

ath:AT5G62100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.517

Rank 1 · TkA01G010710 · TK1151

Nucleus0.373

Rank 2 · TkA01G010710 · TK1151

Cell membrane0.196

Rank 3 · TkA01G010710 · TK1151

Endoplasmic reticulum0.055

Rank 4 · TkA01G010710 · TK1151

Golgi apparatus0.043

Rank 5 · TkA01G010710 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00240ubiquitin61-126 aa

PF06998DUF1307108-121 aa

PF25014NET2A138-177 aa

PF31021RBSN_mid145-199 aa

PF22872DUF7018148-233 aa

PF06998DUF1307152-226 aa

PF02179BAG154-229 aa

PF25014NET2A214-274 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G010710	`PF00240`	ubiquitin	61	126	0.0035	17.8
TkA01G010710	`PF06998`	DUF1307	108	121	0.15	12.9
TkA01G010710	`PF25014`	NET2A	138	177	3.8	8.0
TkA01G010710	`PF31021`	RBSN_mid	145	199	0.02	16.2
TkA01G010710	`PF22872`	DUF7018	148	233	0.04	14.9
TkA01G010710	`PF06998`	DUF1307	152	226	0.15	12.9
TkA01G010710	`PF02179`	BAG	154	229	6.8e-15	56.1
TkA01G010710	`PF25014`	NET2A	214	274	3.8	8.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q0WUQ1`	Arabidopsis thaliana	sp\|Q0WUQ1\|BAG1_ARATH BAG family molecular chaperone regulator 1	47.600%	Swiss-Prot	Medium
`Q9LYP4`	Arabidopsis thaliana	sp\|Q9LYP4\|BAG3_ARATH BAG family molecular chaperone regulator 3	54.000%	Swiss-Prot	High
`Q0WPX7`	Arabidopsis thaliana	sp\|Q0WPX7\|BAG2_ARATH BAG family molecular chaperone regulator 2	50.000%	Swiss-Prot	High
`Q8RX71`	Arabidopsis thaliana	sp\|Q8RX71\|BAG4_ARATH BAG family molecular chaperone regulator 4	39.000%	Swiss-Prot	Medium

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