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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G009120
Reference: TK1151 Chr: Chr01 Coordinates: 2459496-2460128 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

633 bp · TkA01G009120|TK1151|cDNA

ATGGTTCGTGATGGGTTCACACTTGATTTGTCGCTTTTTGAGCTCTTAATTAAATCTCTTCACCATGAAAACAGAGAATATCAGGTTGAAAAGGTAATTGAAGATATGCGGAAGTTATGTAATTTGAATCCCCAAGTTATATCGTCAACTCTAGTGAAAGGTGGGTCCTACGATTATGCAGCCAAAATGTTTGAACTCGCCATTTTAGAGGGTTATGATTTGGATCATGAGTGCTTGCTGTCGATTTTGAGTTCTTACAG...

CDS

Download CDS FASTA

633 bp · TkA01G009120|TK1151|CDS

ATGGTTCGTGATGGGTTCACACTTGATTTGTCGCTTTTTGAGCTCTTAATTAAATCTCTTCACCATGAAAACAGAGAATATCAGGTTGAAAAGGTAATTGAAGATATGCGGAAGTTATGTAATTTGAATCCCCAAGTTATATCGTCAACTCTAGTGAAAGGTGGGTCCTACGATTATGCAGCCAAAATGTTTGAACTCGCCATTTTAGAGGGTTATGATTTGGATCATGAGTGCTTGCTGTCGATTTTGAGTTCTTACAG...

Protein

Download Protein FASTA

210 aa · TkA01G009120|TK1151|PROTEIN

MVRDGFTLDLSLFELLIKSLHHENREYQVEKVIEDMRKLCNLNPQVISSTLVKGGSYDYAAKMFELAILEGYDLDHECLLSILSSYSSSGRHPEALDLLDFLKEHAPESGRIITEALIVILCRSNQLDAAIDEYRKNKNSNTLSGSSSMYESLIEGCESAELFSEASQVLSDMMFIGIQPSKLIYEKVALMYCKMGFTAHDLVNQSEIDG

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G009120
TK1151 IDTkA01G009120
OH-1004 IDLXL04_035431
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)93.800
Protein coverage (%)TK1151 99.524 / OH-1004 14.532
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G009120
LocationChr01:2459496-2460128 (+)
DescriptionSimilar to EMB1270: Pentatricopeptide repeat-containing protein At3g18110, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g18110 May play a role in embryogenesis. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_035431 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009793 embryo development ending in seed dormancy Biological Process
GO:0031425 chloroplast RNA processing Biological Process
GO:0009507 chloroplast Cellular Component
GO:0009534 chloroplast thylakoid Cellular Component
GO:0009570 chloroplast stroma Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT3G18110
ath:AT5G02860
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.554
Rank 1 · TkA01G009120 · TK1151
Plastid0.236
Rank 2 · TkA01G009120 · TK1151
Nucleus0.123
Rank 3 · TkA01G009120 · TK1151
Cytoplasm0.083
Rank 4 · TkA01G009120 · TK1151
Cell membrane0.015
Rank 5 · TkA01G009120 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13812PPR_31-38 aa
PF13041PPR_215-38 aa
PF00637Clathrin15-55 aa
PF01535PPR16-38 aa
PF13428TPR_1416-46 aa
PF29070MSC6_N17-49 aa
PF23276TPR_2418-31 aa
PF27134YobJ18-41 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G009120PF13812PPR_31380.006117.3
TkA01G009120PF13041PPR_215381.1e-0629.4
TkA01G009120PF00637Clathrin15550.009916.3
TkA01G009120PF01535PPR16383.8e-0730.6
TkA01G009120PF13428TPR_1416460.05814.8
TkA01G009120PF29070MSC6_N17490.1711.7
TkA01G009120PF23276TPR_2418310.0414.6
TkA01G009120PF27134YobJ18410.1912.3
TkA01G009120PF01535PPR51663.8e-0730.6
TkA01G009120PF12854PPR_155650.08613.3
TkA01G009120PF23276TPR_24711320.0414.6
TkA01G009120PF12921ATP13741050.01216.2
TkA01G009120PF13428TPR_14781140.05814.8
TkA01G009120PF01535PPR811043.8e-0730.6
TkA01G009120PF13041PPR_2821041.1e-0629.4
TkA01G009120PF12854PPR_1821000.08613.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q5G1S8Arabidopsis thalianasp|Q5G1S8|PP241_ARATH Pentatricopeptide repeat-containing protein At3g18110, chloroplastic50.300%Swiss-ProtHigh

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