TkA01G009090 | RubberDandelionOmics

Gene overview

TkA01G009090

Reference: TK1151 Chr: Chr01 Coordinates: 2445204-2450190 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3483 bp · TkA01G009090|TK1151|cDNA

GTCCTCTGTACCCAAGCCAGATCCAAATCCAATAGCCACGTCATAGTAAACACCTCGTTTTGAGCGCCATATAACCAGAAAACACAACTTCAAAGACACTTAAAAATAGATACTAATGGCGCCCTCTTCTGAAACTAAAACCCTATTTAATTCCACATCTTAAGCTTTTAACATCTTCCTCAGGTATTTTCCACACGCATTGCAATGGCTGCAATCTCCTTTTCTCTCTCCACTTCTTCTCTTTTGGCTTCAAGCTAATT...

CDS

Download CDS FASTA

2952 bp · TkA01G009090|TK1151|CDS

ATGAACCTTAAACTCGGGGTACACGTGGCAGGGGCACACAACCTTCTACCAAAAGACGGCCATGGTTCATCAAGTGCTTTCGTTGAGCTCTATTTCGATGGTCAAAAATACCGAACAACCGTCAAAGAAAAAGACCTCGACCCGATTTGGAACGAAAGCTTCCACTTCAACATATCCGACCCGACAATTCTCCCAAATCTCACACTCGACGCCTTCATCTACAACAACGTCAAAGACACAAATTCAAGATCCTTTCTTGG...

Protein

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983 aa · TkA01G009090|TK1151|PROTEIN

MNLKLGVHVAGAHNLLPKDGHGSSSAFVELYFDGQKYRTTVKEKDLDPIWNESFHFNISDPTILPNLTLDAFIYNNVKDTNSRSFLGKVSITGTSFVPYSDAVVLHYPLEKRGIFSRVRGELGLKVYVTDDPSIKTSDPVAKSVHEPVKNSEKRHTFHHLPHQTQAPANTGVPQAPPPAMRYGYEQIKPTPPPQPPKLVRMYSESSSQPVDYALKETSPYLGGGRVVGGRVIRTDKASSTYDLVEKMHFLFVRVVKARDL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G009090`
TK1151 ID	TkA01G009090
OH-1004 ID	LXL04_005896
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	96.400
Protein coverage (%)	TK1151 95.727 / OH-1004 49.142 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G009090

Location Chr01:2445204-2450190 (-)

Description Similar to FTIP7: FT-interacting protein 7

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g11610`	May function as a signaling molecule by regulating the trafficking of other regulators.	No verified direct reference in this release
`At4g00700`	May function as a signaling molecule by regulating the trafficking of other regulators.	No verified direct reference in this release
`At3g57880`	Required for proliferation and differentiation of shoot stem cells in the shoot apical meristem (SAM), thus determining the appropriate balance between the maintenance of shoot stem cells and their differentiation into other aboveground plant parts via the control of subcellular localization and intercellular trafficking of STM in the shoot apex.	FTIP-Dependent STM Trafficking Regulates Shoot Meristem Development in Arabidopsis.2018 · DOI: 10.1016/j.celrep.2018.04.033
`At1g51570`	Required for proliferation and differentiation of shoot stem cells in the shoot apical meristem (SAM), thus determining the appropriate balance between the maintenance of shoot stem cells and their differentiation into other aboveground plant parts via the control of subcellular localization and intercellular trafficking of STM in the shoot apex.	FTIP-Dependent STM Trafficking Regulates Shoot Meristem Development in Arabidopsis.2018 · DOI: 10.1016/j.celrep.2018.04.033

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0370600`	Promotes nuclear translocation of the transcription factor OSH1, which directly suppresses the auxin biosynthetic gene YUCCA4 during the late development of anthers.	OsFTIP7 determines auxin-mediated anther dehiscence in rice.2018 · DOI: 10.1038/s41477-018-0175-0

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_005896 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009663 plasmodesma organization Biological Process

GO:0009901 anther dehiscence Biological Process

GO:0010930 negative regulation of auxin mediated signaling pathway Biological Process

GO:1902182 shoot apical meristem development Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005768 endosome Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005829 cytosol Cellular Component

KEGG gene cross-reference

ath:AT1G51570

ath:AT3G57880

ath:AT4G11610

ath:AT5G12970

dosa:Os05g0370600

osa:4338582

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.404

Rank 1 · TkA01G009090 · TK1151

Endoplasmic reticulum0.306

Rank 2 · TkA01G009090 · TK1151

Cytoplasm0.270

Rank 3 · TkA01G009090 · TK1151

Golgi apparatus0.182

Rank 4 · TkA01G009090 · TK1151

Nucleus0.088

Rank 5 · TkA01G009090 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00168C24-95 aa

PF00168C2250-353 aa

PF00168C2413-517 aa

PF00168C2574-683 aa

PF11696DUF3292778-844 aa

PF04842DUF639784-827 aa

PF06398Pex24p799-964 aa

PF02453Reticulon800-839 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G009090	`PF00168`	C2	4	95	1e-86	286.7
TkA01G009090	`PF00168`	C2	250	353	1e-86	286.7
TkA01G009090	`PF00168`	C2	413	517	1e-86	286.7
TkA01G009090	`PF00168`	C2	574	683	1e-86	286.7
TkA01G009090	`PF11696`	DUF3292	778	844	2.2	7.3
TkA01G009090	`PF04842`	DUF639	784	827	0.75	9.9
TkA01G009090	`PF06398`	Pex24p	799	964	3e-05	24.0
TkA01G009090	`PF02453`	Reticulon	800	839	0.0012	19.5
TkA01G009090	`PF08372`	PRT_C	801	820	5.4e-81	270.7
TkA01G009090	`PF08372`	PRT_C	828	983	5.4e-81	270.7
TkA01G009090	`PF11696`	DUF3292	889	959	2.2	7.3
TkA01G009090	`PF04842`	DUF639	912	953	0.75	9.9
TkA01G009090	`PF02453`	Reticulon	914	950	0.0012	19.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q84TJ7`	Arabidopsis thaliana	sp\|Q84TJ7\|MCTP7_ARATH Multiple C2 domain and transmembrane region protein 7	73.200%	Swiss-Prot	High
`Q8RXU9`	Arabidopsis thaliana	sp\|Q8RXU9\|MCTP9_ARATH Multiple C2 domain and transmembrane region protein 9	57.600%	Swiss-Prot	High
`Q9M2R0`	Arabidopsis thaliana	sp\|Q9M2R0\|FTIP3_ARATH FT-interacting protein 3	70.500%	Swiss-Prot	High
`Q9C8H3`	Arabidopsis thaliana	sp\|Q9C8H3\|FTIP4_ARATH FT-interacting protein 4	69.200%	Swiss-Prot	High
`Q60EW9`	Oryza sativa subsp. japonica	sp\|Q60EW9\|FTIP7_ORYSJ FT-interacting protein 7	70.300%	Swiss-Prot	High

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