TkA01G009080 | RubberDandelionOmics

Gene overview

TkA01G009080

Reference: TK1151 Chr: Chr01 Coordinates: 2443185-2445014 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1785 bp · TkA01G009080|TK1151|cDNA

ATGGCGACTATATCGTCTAGAAGGAAATTGAAAGTACCTAAAAGAGTTGAATCAAGAAGAGGCTGTTTTCGATCATGTGTGGCAATGTTTGTGTATCCACTTCCGGCCGCTTTATTTTTCATGATTTTAATGTTCGTGTGGTCTTCCTCCACCACATTTATTTCCGGTAGGATCGTTCATGTGTGTGTCTCTTCACGTAAGCTGAGCAACCTCTACTGTCTCTCTGCCACTACCCAACCCAACGCCGAATTCCGTCTTCC...

CDS

Download CDS FASTA

1785 bp · TkA01G009080|TK1151|CDS

ATGGCGACTATATCGTCTAGAAGGAAATTGAAAGTACCTAAAAGAGTTGAATCAAGAAGAGGCTGTTTTCGATCATGTGTGGCAATGTTTGTGTATCCACTTCCGGCCGCTTTATTTTTCATGATTTTAATGTTCGTGTGGTCTTCCTCCACCACATTTATTTCCGGTAGGATCGTTCATGTGTGTGTCTCTTCACGTAAGCTGAGCAACCTCTACTGTCTCTCTGCCACTACCCAACCCAACGCCGAATTCCGTCTTCC...

Protein

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594 aa · TkA01G009080|TK1151|PROTEIN

MATISSRRKLKVPKRVESRRGCFRSCVAMFVYPLPAALFFMILMFVWSSSTTFISGRIVHVCVSSRKLSNLYCLSATTQPNAEFRLPFTNSTSDQEFLENGIPVLQEKLGKEKGSSVSVVNDNFVNLNLKGDPKEGSNVVEYPSEKKEENDGVSTTVDINGDSNLENINPQNERIEEIKKAKKVVEEQLRVHRSWVTNQNHNQNQCEGRGIYVYELPPKFNKELVAQCHNMVPWVDMCKYFSNNALGEPIPELGSRWFRT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G009080`
TK1151 ID	TkA01G009080
OH-1004 ID	LXL04_005896
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	94.500
Protein coverage (%)	TK1151 98.485 / OH-1004 32.242 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G009080

Location Chr01:2443185-2445014 (-)

Description Similar to FTIP7: FT-interacting protein 7

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g63450`	Xyloglucan-specific galacturonosyltransferase that forms the beta-D-galactosyluronic acid-(1->2)-alpha-D-xylosyl linkage.	A galacturonic acid-containing xyloglucan is involved in Arabidopsis root hair tip growth.2012 · DOI: 10.1105/tpc.112.103390
`At5g41250`	Functions in xyloglucan synthesis by adding side chains to the xylosylated glucan backbone.	No verified direct reference in this release
`At2g20370`	Involved in the attachment of the Gal residue on the third xylosyl unit within the XXXG core structure of xyloglucan, the principal glycan that interlaces the cellulose microfibrils in plant cell wall.	The MUR3 gene of Arabidopsis encodes a xyloglucan galactosyltransferase that is evolutionarily related to animal exostosins.2003 · DOI: 10.1105/tpc.009837 KATAMARI1/MURUS3 Is a novel golgi membrane protein that is required for endomembrane organization in Arabidopsis.2005 · DOI: 10.1105/tpc.105.031930 A bi-functional xyloglucan galactosyltransferase is an indispensable salt stress tolerance determinant in Arabidopsis.2013 · DOI: 10.1093/mp/sst062 Protein-protein interactions among xyloglucan-synthesizing enzymes and formation of Golgi-localized multiprotein complexes.2015 · DOI: 10.1093/pcp/pcu161
`At2g29040`	Functions in xyloglucan synthesis by adding side chains to the xylosylated glucan backbone.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0144800`	Involved in the attachment of the Gal residue on the third xylosyl unit within the XXXG core structure of xyloglucan, the principal glycan that interlaces the cellulose microfibrils in plant cell wall.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_005896 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009663 plasmodesma organization Biological Process

GO:0009901 anther dehiscence Biological Process

GO:0010930 negative regulation of auxin mediated signaling pathway Biological Process

GO:1902182 shoot apical meristem development Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005768 endosome Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005829 cytosol Cellular Component

KEGG gene cross-reference

ath:AT1G51570

ath:AT3G57880

ath:AT4G11610

ath:AT5G12970

dosa:Os05g0370600

osa:4338582

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.853

Rank 1 · TkA01G009080 · TK1151

Endoplasmic reticulum0.079

Rank 2 · TkA01G009080 · TK1151

Cell membrane0.044

Rank 3 · TkA01G009080 · TK1151

Cytoplasm0.037

Rank 4 · TkA01G009080 · TK1151

Extracellular0.030

Rank 5 · TkA01G009080 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03016Exostosin_GT47205-535 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G009080	`PF03016`	Exostosin_GT47	205	535	9.2e-79	265.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SH31`	Arabidopsis thaliana	sp\|Q9SH31\|GT16_ARATH Xyloglucan-specific galacturonosyltransferase 1	50.500%	Swiss-Prot	High
`Q9FHD8`	Arabidopsis thaliana	sp\|Q9FHD8\|GT20_ARATH Probable xyloglucan galactosyltransferase GT20	46.700%	Swiss-Prot	Medium
`Q7XJ98`	Arabidopsis thaliana	sp\|Q7XJ98\|MUR3_ARATH Xyloglucan galactosyltransferase MUR3	41.600%	Swiss-Prot	Medium
`O81072`	Arabidopsis thaliana	sp\|O81072\|GT11_ARATH Probable xyloglucan galactosyltransferase GT11	40.800%	Swiss-Prot	Medium
`Q8H038`	Oryza sativa subsp. japonica	sp\|Q8H038\|KATAM_ORYSJ Xyloglucan galactosyltransferase KATAMARI1 homolog	40.700%	Swiss-Prot	Medium

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