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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G006280
Reference: TK1151 Chr: Chr01 Coordinates: 1615295-1618420 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1113 bp · TkA01G006280|TK1151|cDNA

AAAATGTCCCAAAATCTTCAAGTCATTGTTTCTTTTCTTCAACATTGAATCATTGATTACGAATTTACGATACACCTCCGTCTTCCCGGCGCATCTTTTGCTTCTTGTCGCAACTTCCAGTACGACCGGAAGGTTCAAAGATTATGTCACGTTTAATTCAACATAGGTTATCCCTCTCCAGATTCCTCAACACATCAGGTTCAATCGTGAGAGGAAGATATTTATCAACAGAATCTAATAAAATCAATGAACCATTTAAA...

CDS

Download CDS FASTA

849 bp · TkA01G006280|TK1151|CDS

ATGTCACGTTTAATTCAACATAGGTTATCCCTCTCCAGATTCCTCAACACATCAGGTTCAATCGTGAGAGGAAGATATTTATCAACAGAATCTAATAAAATCAATGAACCATTTAAAGTTGAAGAAGCTGAAACAGTAAATATTCCACCTCCTCCAGCAGATAAGTTACTTGTTCTTGGTGGAAGTGGCTTTGTTGGCTCACATGTATGCAAAGAAGCATTAAGTCGTGGCTTGTCTGTTGCTAGTCTTAGCAGATCTGG...

Protein

Download Protein FASTA

282 aa · TkA01G006280|TK1151|PROTEIN

MSRLIQHRLSLSRFLNTSGSIVRGRYLSTESNKINEPFKVEEAETVNIPPPPADKLLVLGGSGFVGSHVCKEALSRGLSVASLSRSGKSSIPESWAKKVQWHQGDLLSGDSWKEALIGVTSVVSCVGGFGSNSYMYKINGTANINAIRAAVEKGVKRFVYVSAADTGVINYLLQGYYDGKRAAETELVVRYPYGHVILRPGFIYGNRRVGSTEIPLGVIGSPLEMVLRHAKPLTQIPLVGPLLTPPVNVTAVAKVAVRAA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G006280
TK1151 IDTkA01G006280
OH-1004 IDLXL04_029100
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)78.400
Protein coverage (%)TK1151 100.000 / OH-1004 99.296
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G006280
LocationChr01:1615295-1618420 (-)
DescriptionSimilar to At1g32220: Uncharacterized protein At1g32220, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g32220 Uncharacterized protein At1g32220, chloroplastic. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_029100 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006695 cholesterol biosynthetic process Biological Process
GO:0006744 ubiquinone biosynthetic process Biological Process
GO:0006979 response to oxidative stress Biological Process
GO:0008203 cholesterol metabolic process Biological Process
GO:0015979 photosynthesis Biological Process
GO:0005634 nucleus Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005759 mitochondrial matrix Cellular Component
GO:0005783 endoplasmic reticulum Cellular Component
GO:0005789 endoplasmic reticulum membrane Cellular Component
GO:0005811 lipid droplet Cellular Component
GO:0009507 chloroplast Cellular Component
KEGG gene cross-reference
ath:AT1G32220
bta:616694
sce:YLR290C
spo:2538806
syn:slr0399
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.902
Rank 1 · TkA01G006280 · TK1151
Plastid0.080
Rank 2 · TkA01G006280 · TK1151
Cytoplasm0.075
Rank 3 · TkA01G006280 · TK1151
Nucleus0.047
Rank 4 · TkA01G006280 · TK1151
Cell membrane0.027
Rank 5 · TkA01G006280 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08732HIM131-71 aa
PF05368NmrA54-163 aa
PF04321RmlD_sub_bind55-86 aa
PF01370Epimerase57-164 aa
PF010733Beta_HSD57-192 aa
PF16363GDP_Man_Dehyd57-116 aa
PF02719Polysacc_synt_257-77 aa
PF13460NAD_binding_1060-206 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G006280PF08732HIM131710.3511.2
TkA01G006280PF05368NmrA541631.1e-0939.0
TkA01G006280PF04321RmlD_sub_bind55860.1811.6
TkA01G006280PF01370Epimerase571644.4e-1453.2
TkA01G006280PF010733Beta_HSD571922.3e-1144.0
TkA01G006280PF16363GDP_Man_Dehyd571160.0008919.5
TkA01G006280PF02719Polysacc_synt_257770.3810.6
TkA01G006280PF13460NAD_binding_10602063e-1970.3
TkA01G006280PF07993NAD_binding_460860.1312.1
TkA01G006280PF07993NAD_binding_41341640.1312.1
TkA01G006280PF04321RmlD_sub_bind1351630.1811.6
TkA01G006280PF08732HIM11372110.3511.2
TkA01G006280PF02719Polysacc_synt_21391630.3810.6
TkA01G006280PF07993NAD_binding_41712130.1312.1
TkA01G006280PF04321RmlD_sub_bind1832070.1811.6
TkA01G006280PF010733Beta_HSD1962072.3e-1144.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FVR6Arabidopsis thalianasp|Q9FVR6|Y1222_ARATH Uncharacterized protein At1g32220, chloroplastic43.600%Swiss-ProtMedium

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