TkA01G004750 | RubberDandelionOmics

Gene overview

TkA01G004750

Reference: TK1151 Chr: Chr01 Coordinates: 1243555-1244606 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

741 bp · TkA01G004750|TK1151|cDNA

ATGGTACCTCTTCGCGATTTGGACTTCAACGGGATGAACTTCTCAGCATTCTTCACTGTGATTAGGAAAATTGCAGCGAAAAGAAGCATAGTACTTTACTATTGCTTACCTCATGAATCTCTGACTGATGGATTAGGTGTGATTCAAAACGAAGGAGACTATAGAGAATTTCTTGAAGTGACACTTGCGAGCCCGGGGAAGAAGGTCTCAGTGTATGTTGATTACAACAATGAGCCTCTTTTCGACTGGATAGAGTTGGA...

CDS

Download CDS FASTA

741 bp · TkA01G004750|TK1151|CDS

ATGGTACCTCTTCGCGATTTGGACTTCAACGGGATGAACTTCTCAGCATTCTTCACTGTGATTAGGAAAATTGCAGCGAAAAGAAGCATAGTACTTTACTATTGCTTACCTCATGAATCTCTGACTGATGGATTAGGTGTGATTCAAAACGAAGGAGACTATAGAGAATTTCTTGAAGTGACACTTGCGAGCCCGGGGAAGAAGGTCTCAGTGTATGTTGATTACAACAATGAGCCTCTTTTCGACTGGATAGAGTTGGA...

Protein

Download Protein FASTA

246 aa · TkA01G004750|TK1151|PROTEIN

MVPLRDLDFNGMNFSAFFTVIRKIAAKRSIVLYYCLPHESLTDGLGVIQNEGDYREFLEVTLASPGKKVSVYVDYNNEPLFDWIELENPDAVDDLEFPTEADVNCGQNREKKCPFRLWASWLVQGEIFQIKSLIEEHNCSRSFKLGSIVTYKWIGKHFVSEMLERPKMSYRKMKAFISKKFNITVSIGQCRNARKFALSEIEGNLIEHYGRLWDYAEEIRRSNPGSTVQALLDRGFFKGFMSVSKV

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G004750`
TK1151 ID	TkA01G004750
OH-1004 ID	LXL04_006308
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	69.100
Protein coverage (%)	TK1151 97.561 / OH-1004 36.105 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA01G004750`
Location	Chr01:1243555-1244606 (-)
Description	Protein of unknown function
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_006308` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	No functional description available
KEGG gene cross-reference	No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.961

Rank 1 · TkA01G004750 · TK1151

Cytoplasm0.083

Rank 2 · TkA01G004750 · TK1151

Cell membrane0.016

Rank 3 · TkA01G004750 · TK1151

Endoplasmic reticulum0.013

Rank 4 · TkA01G004750 · TK1151

Extracellular0.009

Rank 5 · TkA01G004750 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23329EF_HAND_1_PLCG10-23 aa

PF21733Death_3119-133 aa

PF25136DUF7823140-186 aa

PF23329EF_HAND_1_PLCG152-186 aa

PF21733Death_3156-194 aa

PF29404RadD_Zn_ribbon196-211 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G004750	`PF23329`	EF_HAND_1_PLCG	10	23	0.04	14.6
TkA01G004750	`PF21733`	Death_3	119	133	0.078	13.8
TkA01G004750	`PF25136`	DUF7823	140	186	0.12	13.6
TkA01G004750	`PF23329`	EF_HAND_1_PLCG	152	186	0.04	14.6
TkA01G004750	`PF21733`	Death_3	156	194	0.078	13.8
TkA01G004750	`PF29404`	RadD_Zn_ribbon	196	211	0.15	12.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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